View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5171-Insertion-5 (Length: 467)

Name: NF5171-Insertion-5
Description: NF5171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5171-Insertion-5
NF5171-Insertion-5
[»] chr6 (15 HSPs)
chr6 (7-467)||(6465489-6465949)
chr6 (9-448)||(6520148-6520587)
chr6 (85-440)||(6515693-6516045)
chr6 (7-280)||(1841638-1841911)
chr6 (93-386)||(6528441-6528734)
chr6 (11-447)||(6472628-6473061)
chr6 (11-265)||(13035506-13035760)
chr6 (29-217)||(1822092-1822277)
chr6 (9-447)||(6505638-6506076)
chr6 (29-274)||(1838773-1839017)
chr6 (9-265)||(6461585-6461841)
chr6 (128-265)||(6496950-6497087)
chr6 (137-265)||(6457662-6457790)
chr6 (410-449)||(1837453-1837492)
chr6 (239-283)||(6526737-6526781)
[»] chr1 (1 HSPs)
chr1 (47-325)||(35231143-35231424)
[»] chr7 (3 HSPs)
chr7 (110-283)||(3753574-3753747)
chr7 (9-449)||(9664883-9665319)
chr7 (157-280)||(4046538-4046661)
[»] chr4 (1 HSPs)
chr4 (9-449)||(13535907-13536343)


Alignment Details
Target: chr6 (Bit Score: 437; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 7 - 467
Target Start/End: Original strand, 6465489 - 6465949
Alignment:
Q  7 acaaacctcttcagcaatcaaagccaacctagcagccctagcaatcaacttgccataaaagtaagacgaatttgtcgctattgcagacgaatttaaacct 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  6465489 acaaacctcttcagcaatcaaagccaacctagcagccctagcaatcaacttgccataaaagtaagacgaattcgtcgctattgcagacgaattcaaacct 6465588  T
Q  107 tcaacatctttcaaaagaacggaaacaatctcatcatgatattcttctttaacacccttagtagaatgccaagttacagaaaccggatcggttttcaaca 206  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6465589 tcaacatctttcaaaagaacggaaacaatctcatcatgagattcttctttaacacccttagtagaatgccaagttacagaaaccggatcggttttcaaca 6465688  T
Q  207 accatgaatcaccaacaacaccgacaagatcaccatcaatacttctatacttaaaatcagtcaaaacagtaacattatcacaatcactatcatacaaaag 306  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6465689 accatgaatcaccaacaacaccaacaagatcaccatcaatacttctatacttaaaatcattcaaaacagtaacattatcacaatcactatcatacaaaag 6465788  T
Q  307 ctgaacatgaagaggatgtgctaacaataataaatccccccaacctttcttctcccatttatactcaacacaaaatggttttgtaaaaacagcatcaccg 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6465789 ctgaacatgaagaggatgtgctaacaataataaatccccccaacctttcttctcccatttatactcaacacaaaatggttttgtaaaaacagcatcacca 6465888  T
Q  407 cataaagggtaacaagaactaaacctgtcaagaacatcttcatgcttgaaatcagaatcag 467  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6465889 cataaagggtaacaagaactaaacctgtcaagaacatcttcatgcttgaaatcagaatcag 6465949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 9 - 448
Target Start/End: Complemental strand, 6520587 - 6520148
Alignment:
Q  9 aaacctcttcagcaatcaaagccaacctagcagccctagcaatcaacttgccataaaagtaagacgaatttgtcgctattgcagacgaatttaaaccttc 108  Q
    ||||||||||||| || |  || ||||| ||||| |||||||||||||| |||||| | ||||||||  |||| | |||  | || ||||||| | | ||    
T  6520587 aaacctcttcagctattattgctaaccttgcagctctagcaatcaactttccataagaataagacgatgttgttgatatatctgatgaatttagatcctc 6520488  T
Q  109 aacatctttcaaaagaacggaaacaatctcatcatgatattcttctttaacacccttagtagaatgccaagttacagaaaccggatcggttttcaacaac 208  Q
    |||||||||||||||  | |||||||| || | ||| |||||||  |||||||| || | ||||||||||||||||||||| ||||| |||||||| |||    
T  6520487 aacatctttcaaaagtgctgaaacaatttctttatggtattctttcttaacaccatttgaagaatgccaagttacagaaacaggatcagttttcaaaaac 6520388  T
Q  209 catgaatcaccaacaacaccgacaagatcaccatcaatacttctatacttaaaatcagtcaaaacagtaacattatcacaatcacta---tcatacaaaa 305  Q
    |||||||||||||  ||||| ||||| || |||||||| ||| |||||||||||||| |||||| ||||||   |||||||||| ||   ||| ||||||    
T  6520387 catgaatcaccaatgacaccaacaaggtctccatcaatgcttttatacttaaaatcactcaaaatagtaac---atcacaatcaatagtgtcacacaaaa 6520291  T
Q  306 gctgaacatgaagaggatgtgctaacaataataaatccccccaacctttcttctcccatttatactcaacacaaaatggttttgtaaaaacagcatcacc 405  Q
    | |||| ||| | ||| |||||||||| ||  ||||| ||  |||| ||||||| |||||||||||||||||| ||| || ||||||||||||||| |||    
T  6520290 gttgaatatgtaaagggtgtgctaacagtagcaaatcacctgaacccttcttctgccatttatactcaacacagaattgtgttgtaaaaacagcattacc 6520191  T
Q  406 gcataaagggtaacaagaactaaacctgtcaagaacatcttca 448  Q
     |  | |||||||||| |||| ||||| |||||| || |||||    
T  6520190 actcacagggtaacaacaactgaacctatcaagagcagcttca 6520148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 85 - 440
Target Start/End: Complemental strand, 6516045 - 6515693
Alignment:
Q  85 tattgcagacgaatttaaaccttcaacatctttcaaaagaacggaaacaatctcatcatgatattcttctttaacacccttagtagaatgccaagttaca 184  Q
    |||||| || ||||||||||||||||||||||| |||||    |||||||| ||||||||  |||||||||| | ||| ||  | |||||||||||||||    
T  6516045 tattgctgatgaatttaaaccttcaacatcttttaaaagcgacgaaacaatttcatcatgtgattcttcttttatacctttgcttgaatgccaagttaca 6515946  T
Q  185 gaaaccggatcggttttcaacaaccatgaatcaccaacaacaccgacaagatcaccatcaatacttctatacttaaaatcagtcaaaacagtaacattat 284  Q
    |||| ||||||||||||||| | ||||||||||||||||||||| ||||| || |||||||| |||  |||||| ||||||  ||||||||| ||   ||    
T  6515945 gaaatcggatcggttttcaaaatccatgaatcaccaacaacaccaacaaggtctccatcaatgctttgatacttgaaatcatccaaaacagttac---at 6515849  T
Q  285 cacaatcactatcatacaaaagctgaacatgaagaggatgtgctaacaataataaatccccccaacctttcttctcccatttatactcaacacaaaatgg 384  Q
    |||  | ||| | | | ||||| |||| ||||||||| |||||||||||||| ||||| ||  |||||||||||||  | |||||||||| |||||| |     
T  6515848 cacttttacttttagataaaagttgaatatgaagagggtgtgctaacaataacaaatcacctgaacctttcttctcaaacttatactcaagacaaaacgt 6515749  T
Q  385 ttttgtaaaaacagcatcaccgcataaagggtaacaagaactaaacctgtcaagaa 440  Q
    ||   |||    |||||||||  ||||||||||||||||||||||||| |||||||    
T  6515748 ttcactaagtttagcatcacctgataaagggtaacaagaactaaacctatcaagaa 6515693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 1841911 - 1841638
Alignment:
Q  7 acaaacctcttcagcaatcaaagccaacctagcagccctagcaatcaacttgccataaaagtaagacgaatttgtcgctattgcagacgaatttaaacct 106  Q
    ||||||||||||||| ||||| ||| |||  ||| ||||||||||  | || |||||||||||||| |||||| | | |||| |||| || || ||||||    
T  1841911 acaaacctcttcagctatcaatgccgaccatgcaaccctagcaatagatttaccataaaagtaagaagaatttcttgttatttcagatgagttcaaacct 1841812  T
Q  107 tcaacatctttcaaaagaacggaaacaatctcatcatgatattcttctttaacacccttagtagaatgccaagttacagaaaccggatcggttttcaaca 206  Q
    ||||||| |||||||||| | |||||||| ||||||||| |||||||||| ||||| ||  | |||||||||||||  ||| |  ||||||||||||| |    
T  1841811 tcaacatatttcaaaagagctgaaacaatttcatcatgaaattcttcttttacacctttgcttgaatgccaagttatggaagcatgatcggttttcaaaa 1841712  T
Q  207 accatgaatcaccaacaacaccgacaagatcaccatcaatacttctatacttaaaatcagtcaaaacagtaaca 280  Q
     |||||||||||||||||||  |||||| ||  ||| ||| ||| |||||||||||| | ||||||||||||||    
T  1841711 tccatgaatcaccaacaacattgacaagctctgcataaatgcttttatacttaaaataactcaaaacagtaaca 1841638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 93 - 386
Target Start/End: Original strand, 6528441 - 6528734
Alignment:
Q  93 acgaatttaaaccttcaacatctttcaaaagaacggaaacaatctcatcatgatattcttctttaacacccttagtagaatgccaagttacagaaaccgg 192  Q
    ||||||| ||||||||||||||  | |||||    |||||||| | |||||  | || |||||| |||||||| || |||| |||||| | ||||||  |    
T  6528441 acgaattcaaaccttcaacatccgtaaaaagtgatgaaacaatttgatcatagtgtttttctttcacaccctttgtggaataccaagtaatagaaacatg 6528540  T
Q  193 atcggttttcaacaaccatgaatcaccaacaacaccgacaagatcaccatcaatacttctatacttaaaatcagtcaaaacagtaacattatcacaatca 292  Q
    ||| |||||||| | ||| |||||| ||||||  || |||||||| |||||||| ||| ||||||| |||||| |||||||||||| ||| | ||||||     
T  6528541 atcagttttcaaaatccacgaatcagcaacaatgccaacaagatcgccatcaatgcttttatacttgaaatcactcaaaacagtaatattcttacaatct 6528640  T
Q  293 ctatcatacaaaagctgaacatgaagaggatgtgctaacaataataaatccccccaacctttcttctcccatttatactcaacacaaaatggtt 386  Q
     | ||| | |||||||||| ||||||||| ||||||||||  || ||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  6528641 ttctcagataaaagctgaagatgaagagggtgtgctaacatcaacaaatcaccccaacccttcttctcccatttatactcaacacaaaatggtt 6528734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 447
Target Start/End: Complemental strand, 6473061 - 6472628
Alignment:
Q  11 acctcttcagcaatcaaagccaacctagcagccctagcaatcaacttgccataaaagtaagacgaatttgtcgctattgcagacgaatttaaaccttcaa 110  Q
    |||||||| || ||||| || ||||| |||||||| || ||||| || |||||||||||||| ||   ||| | ||| |  || || |||| ||  ||||    
T  6473061 acctcttcggctatcaatgctaacctcgcagcccttgctatcaattttccataaaagtaagatgatgctgttgttatcggtgatgactttagactctcaa 6472962  T
Q  111 catctttcaaaagaacggaaacaatctcatcatgatattcttctttaacacccttagtagaatgccaagttacagaaaccggatcggttttcaacaacca 210  Q
    |||||||  ||||| | |||||||| || |||||  |||||||||| ||||| ||  | ||||||||||| | |||||| ||||| |||||||| | |||    
T  6472961 catcttttgaaagagctgaaacaatttcgtcatgtgattcttcttttacacctttgcttgaatgccaagtaatagaaacaggatctgttttcaaaagcca 6472862  T
Q  211 tgaatcaccaacaacaccgacaagatcaccatcaatacttctatacttaaaatcagtcaaaacagtaacattatcacaatcactatcatacaaaagctga 310  Q
    ||||||||||||||| || ||||| ||||||||||| ||| |||||||||||||  ||||||  ||| ||||     ||||||| | | ||| ||||||     
T  6472861 tgaatcaccaacaactccaacaagttcaccatcaatgcttttatacttaaaatccctcaaaaaggtagcatt---ggaatcacttttagacataagctgg 6472765  T
Q  311 acatgaagaggatgtgctaacaataataaatccccccaacctttcttctcccatttatactcaacacaaaatggttttgtaaaaacagcatcaccgcata 410  Q
    | ||||||||| ||||||||||  | |||||| ||  |||||||||||||  | ||||||||||||| ||| |||| | | |  | ||| |||||  | |    
T  6472764 agatgaagagggtgtgctaacatcagtaaatcacctgaacctttcttctcaaacttatactcaacactaaacggttctttgagcatagcttcacctgaca 6472665  T
Q  411 aagggtaacaagaactaaacctgtcaagaacatcttc 447  Q
    ||||||||||||||||  || | ||||| ||||||||    
T  6472664 aagggtaacaagaactgtacttatcaaggacatcttc 6472628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 13035760 - 13035506
Alignment:
Q  11 acctcttcagcaatcaaagccaacctagcagccctagcaatcaacttgccataaaagtaagacgaatttgtcgctattgcagacgaatttaaaccttcaa 110  Q
    ||||||||||  ||||| || ||||| ||||| || || ||||| || |||||||||||||| ||  | || | ||| |  || || |||| ||||||||    
T  13035760 acctcttcagttatcaatgctaaccttgcagctcttgctatcaattttccataaaagtaagatgatgtcgttgttatcggtgatgactttagaccttcaa 13035661  T
Q  111 catctttcaaaagaacggaaacaatctcatcatgatattcttctttaacacccttagtagaatgccaagttacagaaaccggatcggttttcaacaacca 210  Q
    |||||||| ||||| | |||||||| |  |||||  |||||||||| ||||| ||  | | |||||||||||||||||| | |||||||||||| | |||    
T  13035660 catctttcgaaagagctgaaacaattttgtcatgtgattcttcttttacacctttgcttgtatgccaagttacagaaacagaatcggttttcaaaagcca 13035561  T
Q  211 tgaatcaccaacaacaccgacaagatcaccatcaatacttctatacttaaaatca 265  Q
    ||||||||||||||| || ||||| ||||||||||| ||| |||||||| |||||    
T  13035560 tgaatcaccaacaactccaacaagttcaccatcaatgcttttatacttataatca 13035506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 29 - 217
Target Start/End: Complemental strand, 1822277 - 1822092
Alignment:
Q  29 gccaacctagcagccctagcaatcaacttgccataaaagtaagacgaatttgtcgctattgcagacgaatttaaaccttcaacatctttcaaaagaacgg 128  Q
    |||||||| |||||||| |||||||| || | |||||||||||| |||||||| | ||||||||| || || | |||||||||||||||||||| | | |    
T  1822277 gccaaccttgcagccctggcaatcaatttactataaaagtaagaagaatttgttgttattgcagatgagttcataccttcaacatctttcaaaatagctg 1822178  T
Q  129 aaacaatctcatcatgatattcttctttaacacccttagtagaatgccaagttacagaaaccggatcggttttcaacaaccatgaatca 217  Q
    |||||||    |||||| |||||| ||||||||| ||  | |||||||||||||| ||||| |||||| ||||||| | ||||||||||    
T  1822177 aaacaat---ttcatgagattcttgtttaacacctttgcttgaatgccaagttacggaaacaggatcgattttcaaaagccatgaatca 1822092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 9 - 447
Target Start/End: Original strand, 6505638 - 6506076
Alignment:
Q  9 aaacctcttcagcaatcaaagccaacctagcagccctagcaatcaacttgccataaaagtaagacgaatttgtcgctattg---cagacgaatttaaacc 105  Q
    ||||||||||||| ||||| || | |||||| || || ||||| || || |||||||| |||||||| |||||   | |||   |||| || ||||||||    
T  6505638 aaacctcttcagctatcaatgcaagcctagctgctcttgcaattaattttccataaaaataagacgattttgtttgttttgttgcagatgagtttaaacc 6505737  T
Q  106 ttcaacatctttcaaaagaacggaaacaatctcatcatgatattcttctttaacacccttagtagaatgccaagttacagaaaccggatcggttttcaac 205  Q
    ||||||||||||  ||||    |||||||| ||||   |  |||| ||||| ||||| ||  | || |||||||| |  ||||| || || ||||||||     
T  6505738 ttcaacatctttagaaagtgatgaaacaatttcattgcgtgattcgtcttttacacctttgcttgagtgccaagtcatggaaacaggttctgttttcaaa 6505837  T
Q  206 aaccatgaatcaccaacaacaccgacaagatcaccatcaatacttctatacttaaaatcagtcaa-aacagtaacattatcacaatcactatcatacaaa 304  Q
    | ||||||||||||||||||||| ||||| ||||||||||| ||| ||||||| |||||| |||| |||||| ||   |||||  ||||| |   ||| |    
T  6505838 atccatgaatcaccaacaacaccaacaaggtcaccatcaatgcttgtatacttgaaatca-tcaagaacagttac---atcactctcactttttgacaga 6505933  T
Q  305 agctgaacatgaagaggatgtgctaacaataataaatccccccaacctttcttctcccatttatactcaacacaaaatggttttgtaaaaacagcatcac 404  Q
    || |||| ||||||||| |||||||| ||||| ||||| ||  || | ||||||||  | |||||||||||||||||||||| | | |    ||||| ||    
T  6505934 agttgaagatgaagagggtgtgctaataataacaaatcacctgaaacattcttctcaaacttatactcaacacaaaatggttctctgagtttagcattac 6506033  T
Q  405 cgcataaagggtaacaagaactaaacctgtcaagaacatcttc 447  Q
    |   |||||||| |||||||||||| |||||||||||| ||||    
T  6506034 ctgctaaagggtgacaagaactaaatctgtcaagaacagcttc 6506076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 29 - 274
Target Start/End: Complemental strand, 1839017 - 1838773
Alignment:
Q  29 gccaacctagcagccctagcaatcaacttgccataaaagtaagacgaatttgtcgctattgcagacgaatttaaaccttcaacatctttcaaaagaacgg 128  Q
    |||||||| |||||||| |||||||| || ||||||||||| || |||||||    ||||||| | || || ||   ||||||||||||||| ||| | |    
T  1839017 gccaaccttgcagccctggcaatcaatttaccataaaagtatgaagaatttgatattattgcaaatgagttcaattattcaacatctttcaagagagctg 1838918  T
Q  129 aaacaatctcatcatgatattcttctttaacacccttagtagaatgccaagttacagaaaccggatcggttttcaacaaccatgaatcaccaacaacacc 228  Q
    ||||||| ||||||| | ||||||| || ||||  ||  | |||||||||| |||||||||  ||||||||||||| | |||||||| ||||||| ||||    
T  1838917 aaacaatttcatcattagattcttcatttacacaatttcttgaatgccaagatacagaaacatgatcggttttcaaaatccatgaat-accaacagcacc 1838819  T
Q  229 gacaagatcaccatcaatacttctatacttaaaatcagtcaaaaca 274  Q
    |||| | || | |||||  ||| ||||||| |||| | ||||||||    
T  1838818 gacaggctctcgatcaaagcttttatacttgaaataactcaaaaca 1838773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 265
Target Start/End: Complemental strand, 6461841 - 6461585
Alignment:
Q  9 aaacctcttcagcaatcaaagccaacctagcagccctagcaatcaacttgccataaaagtaagacgaatttgtcgctattgcagacgaatttaaaccttc 108  Q
    ||||||||||||| ||||| || ||||| || |||||  ||||||| || |||||| |||||||    ||||| | ||||   || |||| || ||| ||    
T  6461841 aaacctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatcttttgtggttatttttgatgaatctagaccctc 6461742  T
Q  109 aacatctttcaaaagaacggaaacaatctcatcatgatattcttctttaacacccttagtagaatgccaagttacagaaaccggatcggttttcaacaac 208  Q
    ||||||||| |||||    ||||| || |||||| || ||||||  || ||||| || || ||| |||| || |||  ||| ||||| |||| ||| | |    
T  6461741 aacatcttttaaaagtgatgaaacgatttcatcacgagattctttcttcacaccattcgttgaaagccatgtaacatcaacaggatcagtttccaaaagc 6461642  T
Q  209 catgaatcaccaacaacaccgacaagatcaccatcaatacttctatacttaaaatca 265  Q
    |||||||||||||||||||| ||||| || |||||||| |||  |||||||||||||    
T  6461641 catgaatcaccaacaacaccaacaaggtctccatcaatgctttgatacttaaaatca 6461585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 265
Target Start/End: Original strand, 6496950 - 6497087
Alignment:
Q  128 gaaacaatctcatcatgatattcttctttaacacccttagtagaatgccaagttacagaaaccggatcggttttcaacaaccatgaatcaccaacaacac 227  Q
    ||||| || |||||| || ||||||  || ||||| || || ||| |||| || ||| |||| ||||| |||| ||| | ||||||||||||||||||||    
T  6496950 gaaacgatttcatcacgagattctttcttcacaccattggttgaaagccatgtaacataaacaggatcagtttccaaaagccatgaatcaccaacaacac 6497049  T
Q  228 cgacaagatcaccatcaatacttctatacttaaaatca 265  Q
    | ||||| || |||||||| |||  |||||||||||||    
T  6497050 caacaaggtctccatcaatgctttgatacttaaaatca 6497087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 265
Target Start/End: Original strand, 6457662 - 6457790
Alignment:
Q  137 tcatcatgatattcttctttaacacccttagtagaatgccaagttacagaaaccggatcggttttcaacaaccatgaatcaccaacaacaccgacaagat 236  Q
    ||||||||| ||||||| || | ||| || || |||||||| || |||||||| ||||  |||||||| |||||||| || ||||||||||| ||||| |    
T  6457662 tcatcatgaaattcttcattgatacctttggtggaatgccatgtaacagaaacaggatgagttttcaataaccatgagtctccaacaacaccaacaagct 6457761  T
Q  237 caccatcaatacttctatacttaaaatca 265  Q
    | || ||||| |||  |||||| ||||||    
T  6457762 cgccgtcaatgctttgatacttcaaatca 6457790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 1837492 - 1837453
Alignment:
Q  410 aaagggtaacaagaactaaacctgtcaagaacatcttcat 449  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  1837492 aaagggtaacaagaactaaacctgtcaagaacaacttcat 1837453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 6526737 - 6526781
Alignment:
Q  239 ccatcaatacttctatacttaaaatcagtcaaaacagtaacatta 283  Q
    |||||||| | | |||||||||||||| |||||||||||||||||    
T  6526737 ccatcaatgcgtttatacttaaaatcactcaaaacagtaacatta 6526781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 47 - 325
Target Start/End: Complemental strand, 35231424 - 35231143
Alignment:
Q  47 gcaatcaacttgccataaaagtaagacgaatttgtcgctattgcagacgaatttaaaccttcaacatctttcaaaagaacggaaacaatctcatcatgat 146  Q
    |||||||| || |||||||| ||||| ||| |  | | ||| ||||| |||||||  || |||||||| |||||| |||| |||||||| |||| |||      
T  35231424 gcaatcaattttccataaaaataagatgaagtccttgttatcgcagatgaatttagtccctcaacatcattcaaaggaaccgaaacaatttcataatgta 35231325  T
Q  147 attcttctttaacacccttagtagaatgccaagttacagaaaccggatcggttttcaacaaccatgaatcac---caacaacaccgacaagatcaccatc 243  Q
    |||||||||||||||| ||  || | |||||||||||| |||| | || ||||||||| | ||||| |||||   |||||||||| ||||| |||| |||    
T  35231324 attcttctttaacaccatttataaagtgccaagttacaaaaacagaattggttttcaaaagccatggatcacaaccaacaacaccaacaagttcactatc 35231225  T
Q  244 aatacttctatacttaaaatcagtcaaaacagtaacattatcacaatcactatcatacaaaagctgaacatgaagaggatgt 325  Q
    ||| ||| |||||||||||||| |||||||||||||||||| ||||||| | ||| | |||||||||| |||||||||||||    
T  35231224 aatgcttttatacttaaaatcattcaaaacagtaacattattacaatcattctcagataaaagctgaagatgaagaggatgt 35231143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 110 - 283
Target Start/End: Complemental strand, 3753747 - 3753574
Alignment:
Q  110 acatctttcaaaagaacggaaacaatctcatcatgatattcttctttaacacccttagtagaatgccaagttacagaaaccggatcggttttcaacaacc 209  Q
    |||||||| | |||| | |||||||||||||||||  |||||| | ||||||| ||| |||||| ||| ||||||  ||| ||||| |||| ||| | ||    
T  3753747 acatctttaacaagagccgaaacaatctcatcatgtgattcttttgtaacacctttactagaataccatgttacattaacaggatcagtttccaatatcc 3753648  T
Q  210 atgaatcaccaacaacaccgacaagatcaccatcaatacttctatacttaaaatcagtcaaaacagtaacatta 283  Q
    ||||||| || | |||||| || ||||||||||| | |||| ||||||| ||||||  ||||||||||||||||    
T  3753647 atgaatctccgataacaccaacgagatcaccatcgacacttgtatacttcaaatcatgcaaaacagtaacatta 3753574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 449
Target Start/End: Complemental strand, 9665319 - 9664883
Alignment:
Q  9 aaacctcttcagcaatcaaagccaacctagcagccctagcaatcaacttgccataaaagtaagacgaatttgtcgctattgcagacgaatttaaaccttc 108  Q
    |||| |||||||| ||||| || | |||||| || || |||||||| || ||||||||||| || ||  |||| | ||||  ||| ||||||| ||| ||    
T  9665319 aaacgtcttcagctatcaatgcaagcctagctgctcttgcaatcaattttccataaaagtatgaagatgttgttgttattaaagatgaatttagaccctc 9665220  T
Q  109 aacatctttcaaaagaacggaaacaatctcatcatgatattcttctttaacacccttagtagaatgccaagttacagaaaccggatcggttttcaacaac 208  Q
    ||||||  |||||||    ||||| || || | ||| | |||||| || || || || |||||  |||| ||||||||||||||||| ||||| ||   |    
T  9665219 aacatcactcaaaagcgatgaaacgatttctttatggtgttcttccttcacgccatttgtagatagccatgttacagaaaccggatcagtttttaaatgc 9665120  T
Q  209 catgaatcaccaacaacaccgacaagatcaccatcaatacttctatacttaaaatcagtcaaaacagtaacattatcacaatcactatcatacaaaagct 308  Q
    ||  |||| |   ||| ||| ||||||||||||||||| ||| |||||||||||  |||||| || |||||   |||||||||| |||||||||||||      
T  9665119 cacaaatcgcgc-caataccaacaagatcaccatcaatgcttttatacttaaaacaagtcaataccgtaac---atcacaatcaatatcatacaaaaggc 9665024  T
Q  309 gaacatgaagaggatgtgctaacaataataaatccccccaacctttcttctcccatttatactcaacacaaaatggttttgtaaaaacagcatcaccgca 408  Q
    ||| ||| ||||  || || | || ||| || || || || |||| ||||| ||| |||||||| ||| |||| ||||||  ||||| | | | |||  |    
T  9665023 gaagatggagagcgtgagccaccattaacaattcaccacacccttccttcttccacttatactccacagaaaacggttttccaaaaataactttacctga 9664924  T
Q  409 taaagggtaacaagaactaaacctgtcaagaacatcttcat 449  Q
    ||||||||||||||  |||||| ||||||||||| ||||||    
T  9664923 taaagggtaacaagtgctaaacttgtcaagaacagcttcat 9664883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 157 - 280
Target Start/End: Original strand, 4046538 - 4046661
Alignment:
Q  157 aacacccttagtagaatgccaagttacagaaaccggatcggttttcaacaaccatgaatcaccaacaacaccgacaagatcaccatcaatacttctatac 256  Q
    |||||| ||| | |||||||| ||||||  ||| | ||| ||||||||   ||||||||  ||||||||||| |||||||||||||||| |||| |||||    
T  4046538 aacacctttatttgaatgccatgttacattaacagaatcagttttcaaattccatgaatttccaacaacaccaacaagatcaccatcaacacttttatac 4046637  T
Q  257 ttaaaatcagtcaaaacagtaaca 280  Q
    ||||||||| | | ||||||||||    
T  4046638 ttaaaatcattaagaacagtaaca 4046661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 449
Target Start/End: Complemental strand, 13536343 - 13535907
Alignment:
Q  9 aaacctcttcagcaatcaaagccaacctagcagccctagcaatcaacttgccataaaagtaagacgaatttgtcgctattgcagacgaatttaaaccttc 108  Q
    |||| |||||||| ||||| || | |||||| || || |||||||| || ||||||||||| || ||  |||| | ||||  ||| ||||||| ||| ||    
T  13536343 aaacgtcttcagctatcaatgcaagcctagctgctcttgcaatcaattttccataaaagtatgaagatgttgttgttattaaagatgaatttagaccctc 13536244  T
Q  109 aacatctttcaaaagaacggaaacaatctcatcatgatattcttctttaacacccttagtagaatgccaagttacagaaaccggatcggttttcaacaac 208  Q
    ||||||  |||||||    ||||| || || | ||| | |||||| || || || || |||||  |||| ||||||||||||||||| ||||| ||   |    
T  13536243 aacatcactcaaaagcgatgaaacgatttctttatggtgttcttccttcacgccatttgtagatagccatgttacagaaaccggatcagtttttaaatgc 13536144  T
Q  209 catgaatcaccaacaacaccgacaagatcaccatcaatacttctatacttaaaatcagtcaaaacagtaacattatcacaatcactatcatacaaaagct 308  Q
    ||  |||| |   ||| ||| ||||||||||||||||| ||| |||||||||||  |||||| || |||||   |||||||||| |||||||||||||      
T  13536143 cacaaatcgcgc-caataccaacaagatcaccatcaatgcttttatacttaaaacaagtcaataccgtaac---atcacaatcaatatcatacaaaaggc 13536048  T
Q  309 gaacatgaagaggatgtgctaacaataataaatccccccaacctttcttctcccatttatactcaacacaaaatggttttgtaaaaacagcatcaccgca 408  Q
    ||| ||| ||||  || || | || ||| || || || || |||| ||||| ||| |||||||| ||| |||| ||||||  ||||| | | | |||  |    
T  13536047 gaagatggagagcgtgagccaccattaacaattcaccacacccttccttcttccacttatactccacagaaaacggttttccaaaaataactttacctga 13535948  T
Q  409 taaagggtaacaagaactaaacctgtcaagaacatcttcat 449  Q
    ||||||||||||||  |||||| ||||||||||| ||||||    
T  13535947 taaagggtaacaagtgctaaacttgtcaagaacagcttcat 13535907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University