View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5171-Insertion-8 (Length: 296)
Name: NF5171-Insertion-8
Description: NF5171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5171-Insertion-8 |
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| [»] chr1 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 8 - 296
Target Start/End: Original strand, 45067195 - 45067483
Alignment:
| Q |
8 |
ctgtgcactcatttcaatagtcacattagaaatgcatatccctgtgaaagggtcattagaaattccgtcaagttgtcctgcaattgtcacattcttagca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45067195 |
ctgtgcactcatttcaatagtcacattagaaatgcatatccctgtgaaagggtcattagaaattccgtcaagttgtcctgcaattgtcacattcttagca |
45067294 |
T |
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| Q |
108 |
attatatctctatagtttattccactaattttaggcaatgcttttggatcaaatccattttcagcgtgtgacttataagcccctgtcatccaaaaaacat |
207 |
Q |
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| T |
45067295 |
ataatatctctatagtttattccactaattttaggcaatgcttttggatcaaatccattttcagcgtgtgacttataagcccctgtcatccaaaaaacat |
45067394 |
T |
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| Q |
208 |
atttcattgtgttcaaattcattcctttgacgaatatatccttcacatatgcgcctctaccaacggctgttttgattctaacagctgat |
296 |
Q |
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| T |
45067395 |
atttcattgtgttcaaattcattcctttgacgaatatatccttcacatatgcgcctctaccaacggctgttttgattctaacagctgat |
45067483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 9 - 292
Target Start/End: Original strand, 45074756 - 45075039
Alignment:
| Q |
9 |
tgtgcactcatttcaatagtcacattagaaatgcatatccctgtgaaagggtcattagaaattccgtcaagttgtcctgcaattgtcacattcttagcaa |
108 |
Q |
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| T |
45074756 |
tgtgcactcatttcaatagtcgcattagaaacacaaattccagtaaaagggtcattagaaattccatcaagtttgcctgcaatagtcacattcttggcag |
45074855 |
T |
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| Q |
109 |
ttatatctctatagtttattccactaattttaggcaatgcttttggatcaaatccattttcagcgtgtgacttataagcccctgtcatccaaaaaacata |
208 |
Q |
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| T |
45074856 |
taacatctctataatttatttcactaattttaggcaatgcgtttggatcaaatccattatcagggtgtgacttataagaccctgtcatccaaaaaacata |
45074955 |
T |
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| Q |
209 |
tttcattgtgttcaaattcattcctttgacgaatatatccttcacatatgcgcctctaccaacggctgttttgattctaacagc |
292 |
Q |
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||||||||||| |||||||||||||||||| || || ||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
45074956 |
tttcattgtgtccaaattcattcctttgacaaaaatgtccttcacatatgcgcctctaccgatggctgttttgattctaacagc |
45075039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 45077986 - 45078245
Alignment:
| Q |
9 |
tgtgcactcatttcaatagtcacattagaaatgcatatccctgtgaaagggtcattagaaattccgtcaagttgtcctgcaattgtcacattcttagcaa |
108 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| || || |||||||| ||||||||||| ||||||| || ||||| |||||||||||||| |
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| T |
45077986 |
tgtgcactcatttcaatagtcacattagaaacacatattccagtaaaagggtcgttagaaattccttcaagtttgcccgcaatagtcacattcttagcgg |
45078085 |
T |
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| Q |
109 |
ttatatctctatagtttattccactaattttaggcaatgcttttggatcaaatccattttcagcgtgtgacttataagcccctgtcatccaaaaaacata |
208 |
Q |
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| | ||||||||| |||||||||||||||||||||||||| |||||||||||||| || |||| || ||||| |||||||||||||| ||||| |
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| T |
45078086 |
tgacatctctataatttattccactaattttaggcaatgcgtttggatcaaatccgttatcaggatgatctccataagaacctgtcatccaaaacacata |
45078185 |
T |
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| Q |
209 |
tttcattgtgttcaaattcattcctttgacgaatatatccttcacatatgcgcctctacc |
268 |
Q |
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||||||||| ||||||| ||||||||||||||| || ||||||||| | || |||||||| |
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| T |
45078186 |
tttcattgtattcaaatccattcctttgacgaaaatgtccttcacaaaagcacctctacc |
45078245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 296
Target Start/End: Original strand, 45082282 - 45082569
Alignment:
| Q |
9 |
tgtgcactcatttcaatagtcacattagaaatgcatatccctgtgaaagggtcattagaaattccgtcaagttgtcctgcaattgtcacattcttagcaa |
108 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| || || |||||||| ||||||||||| |||| || || ||||| |||||||||||||| |
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| T |
45082282 |
tgtgcactcatttcaatagtcacattagaaacacatattccagtaaaagggtcgttagaaattccttcaactttgcccgcaatagtcacattcttagcgg |
45082381 |
T |
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| Q |
109 |
ttatatctctatagtttattccactaattttaggcaatgcttttggatcaaatccattttcagcgtgtgacttataagcccctgtcatccaaaaaacata |
208 |
Q |
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| T |
45082382 |
tgacatctctataatttattccactaattttaggcaatgcgtttggatcaaatccgttatcaggatgatctccataagaacctgtcatccaaaacacata |
45082481 |
T |
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| Q |
209 |
tttcattgtgttcaaattcattcctttgacgaatatatccttcacatatgcgcctctaccaacggctgttttgattctaacagctgat |
296 |
Q |
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| T |
45082482 |
tttcaatgtattcaaatccattcctttgacaaaaatgtccttcacaaaagcacctctaccgacggcagatttgatcctaacagctgat |
45082569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 296
Target Start/End: Original strand, 34504539 - 34504818
Alignment:
| Q |
20 |
ttcaatagtcacattagaaatgcatatccctgtgaaagggtcattagaaattccgtcaagttgtcctgcaattgtcacattcttagcaattatatctcta |
119 |
Q |
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||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||||||| || |||| ||||||||||||||||| | ||||||| |
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| T |
34504539 |
ttcaatagtcacattagaaatacatatccctgtaaaaggatcattagaaattccttcaagttgccccgcaacggtcacattcttagcaataacatctcta |
34504638 |
T |
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| Q |
120 |
tagtttattccactaattttaggcaatgcttttggatcaaatccattttcagcgtgtgact-tataagcccctgtcatccaaaaaacatatttc---att |
215 |
Q |
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| | |||||| |||||||||||||||||||||||||||||||||| |||| ||| | || ||||| |||||||| |||||| |||||| || ||| |
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| T |
34504639 |
aaaataattccagtaattttaggcaatgcttttggatcaaatccattatcagggtg-gtctccataagaccctgtcaaccaaaacacatatctcaatatt |
34504737 |
T |
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| Q |
216 |
gtgttcaaattcattcctttgacgaatatatccttcacatatgcgcctctaccaacggctgttttgattctaacagctgat |
296 |
Q |
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|||||||| |||| ||||||||| || || |||||||||||| |||||||||| ||||||| ||||||||||||||||||| |
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| T |
34504738 |
gtgttcaatttcactcctttgacaaaaatgtccttcacatatccgcctctaccgacggctgatttgattctaacagctgat |
34504818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 189 - 296
Target Start/End: Original strand, 17584414 - 17584521
Alignment:
| Q |
189 |
cctgtcatccaaaaaacatatttcattgtgttcaaattcattcctttgacgaatatatccttcacatatgcgcctctaccaacggctgttttgattctaa |
288 |
Q |
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|||||||||||||| |||||||||||||| ||||| ||||||||| | || |||||| | ||||||||||| ||||||||||| || ||||||||||||| |
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| T |
17584414 |
cctgtcatccaaaacacatatttcattgttttcaatttcattcctctaacaaatatacctttcacatatgctcctctaccaactgcagttttgattctaa |
17584513 |
T |
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| Q |
289 |
cagctgat |
296 |
Q |
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||||||| |
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| T |
17584514 |
tagctgat |
17584521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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