View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5171_low_3 (Length: 322)
Name: NF5171_low_3
Description: NF5171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5171_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 24 - 305
Target Start/End: Original strand, 3361359 - 3361640
Alignment:
| Q |
24 |
gcagcgtcaagttggtcgattcttttggtcaaagcactacaacaaatttcaggccagttttcatgctcagtacaggccaaatcattctcaaggcacaaga |
123 |
Q |
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| T |
3361359 |
gcagcgtcaagttggtcgattcttttggtcaaagcactacaacaaatttcaggccagttttcatgctcaatacaggccaaatcattctcaaggcacaaga |
3361458 |
T |
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| Q |
124 |
gatcattttcgagtttctcaatttcaacatctgccttggtgttcaaaattctcaaaacttgaacacatgattccacattcaaggcatgttcttcaatctc |
223 |
Q |
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| T |
3361459 |
gatcattttcgagtttctcaatttcaacatctgccttggtgttcaaaattctcaaaacttgaacacatgattccacattcaaggcatgttcttcaatctc |
3361558 |
T |
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| Q |
224 |
atctgcaaaactcaacagaaagctacagtaaattatcaacatacacggtgggatttatctcctcgaattagtcagtcctatg |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| | |||| ||||||||||||||||||||||||| |
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| T |
3361559 |
atctgcaaaactcaacagaaagctacagtaaattatcaacatagacggttgaatttgtctcctcgaattagtcagtcctatg |
3361640 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 256
Target Start/End: Original strand, 35907501 - 35907688
Alignment:
| Q |
69 |
atttcaggccagttttcatgctcagtacaggccaaatcattctcaaggcacaagagatcattttcgagtttctcaatttcaacatctgccttggtgttca |
168 |
Q |
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||||||||||||||||||| ||||| |||||||| ||||||| |||| || ||||| |||| | || |||||| ||| |||||| |||||| ||| |
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| T |
35907501 |
atttcaggccagttttcattttcagtccaggccaattcattctgaagggacgcgagattcatttccaattgctcaatctcattatctgcattggtgatca |
35907600 |
T |
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| Q |
169 |
aaattctcaaaacttgaacacatgattccacattcaaggcatgttcttcaatctcatctgcaaaactcaacagaaagctacagtaaat |
256 |
Q |
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| T |
35907601 |
tacatctcaaaacctgaacacagcacttctcatccttggcatcttcctccatatcatctgcaaaactcaacaaaaagctccagtaaat |
35907688 |
T |
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