View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5171_low_9 (Length: 217)
Name: NF5171_low_9
Description: NF5171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5171_low_9 |
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| [»] scaffold0194 (1 HSPs) |
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Alignment Details
Target: scaffold0194 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 25894 - 25684
Alignment:
| Q |
1 |
caaaactcattttatcaaaagaatttgcaccataaaatcctcctgaagtttgtgtctgaggcatgtaattatccaccattccgttgttgttttcacccga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25894 |
caaaactcattttatcaaaagaatttgcaccataaaatcctcctgaagtttgtgtctgaggcatgtaattatccaccattccgttgttgttttcacccga |
25795 |
T |
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| Q |
101 |
tgtttcgccaactcgatacttcaaaagctgttcgtattgttgctgttgttggtgatgatgatgatcaagagagtaatcaagtgtgttaaaacttgatggc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25794 |
tgtttcgccaactcgatacttcaaaagctgttcgtattgttgctgttgttgatgatgatgatgatcaagagagtaatcaagtgtgttaaaacttgatggc |
25695 |
T |
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| Q |
201 |
atgggtggtgc |
211 |
Q |
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||||||||||| |
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| T |
25694 |
atgggtggtgc |
25684 |
T |
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