View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5172-Insertion-1 (Length: 1024)
Name: NF5172-Insertion-1
Description: NF5172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5172-Insertion-1 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 575 - 1024
Target Start/End: Complemental strand, 7501084 - 7500631
Alignment:
| Q |
575 |
tgagaatagctagaatacgtaaataaattaactataaaggagatattaaactgaaaacactaatcaatatcaaagctaatttcctgaatcatagcttgaa |
674 |
Q |
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| T |
7501084 |
tgagaatagctagaatacgtaaataaattaactataaaggagatattaaactgaaaacactaatcaatatcaaagctaatttcctgaatcatagcttgaa |
7500985 |
T |
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| Q |
675 |
aacaatagcttgttcaactcaacaatttctttcaccatattttgtgggttttgtgcctcttgtacnnnnnnnnnnnnnnnnnaaggagtacctcttgtac |
774 |
Q |
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| T |
7500984 |
aacaatagcttgttcaactcaacaatttctttcaccatattttgtgggtttagtgcctcttgtatttattttttatttttttagggagtacctcttgtac |
7500885 |
T |
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| Q |
775 |
tcattctcatctttctattttaataaatattcatttgctgcttaaagaaaactcccttcacccatcatgaataatttcagtaggttagatccagacatca |
874 |
Q |
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| T |
7500884 |
tcattctcatctttctattttaataaatattcatttgctgctaaaagaaaactcccttcacccatcatgaataatttcagtaggttagatccagacatca |
7500785 |
T |
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| Q |
875 |
tccagacctatatcctttcacgcttcgatggggcagccttaatggcattgtcctgtgtatgttctgaccttcgccacttgatctgcaacaacaaggaatt |
974 |
Q |
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| T |
7500784 |
tccagacctatatccttccacgcctcgatggggcagccttaatggcattgtcctgtgtatgttccgaccttcgccacttgatctgcaacaacgaggaatt |
7500685 |
T |
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| Q |
975 |
atggcggaacatttgca-ctccatgtg--cttg-cttctgcatccaaccgttag |
1024 |
Q |
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| T |
7500684 |
atggcggaacatttgcacctccatgtggccttgccttctgcatccaaccgttag |
7500631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 316 - 445
Target Start/End: Complemental strand, 7509182 - 7509053
Alignment:
| Q |
316 |
tgaagcaaggtgccaccattctccttaatgcaattcaaaatggggagaggaagaaatttgatttaccaaagcaagagtttgacaaattccacatcagtaa |
415 |
Q |
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| T |
7509182 |
tgaagcaaggtgccaccattctccttaatgcaattcaaaatggggagaggaagaaatttgatttaccaaagcaagaggttgacaaattccaaatcagtaa |
7509083 |
T |
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| Q |
416 |
attgcaaaggaagaagaataggaaaaggaa |
445 |
Q |
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| T |
7509082 |
tttgcaaaggaagaagaataggaaaaggaa |
7509053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 465 - 506
Target Start/End: Complemental strand, 7501196 - 7501155
Alignment:
| Q |
465 |
tcctaagtgttctttctataatgtatcctaaatttattattt |
506 |
Q |
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| T |
7501196 |
tcctaagtgttctttctataatgtgtcctaaatttattattt |
7501155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 835 - 875
Target Start/End: Original strand, 8057200 - 8057240
Alignment:
| Q |
835 |
cccatcatgaataatttcagtaggttagatccagacatcat |
875 |
Q |
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| T |
8057200 |
cccatcatgaataatttcagtaggttatgtccagacatcat |
8057240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 316 - 382
Target Start/End: Original strand, 27241492 - 27241558
Alignment:
| Q |
316 |
tgaagcaaggtgccaccattctccttaatgcaattcaaaatggggagaggaagaaatttgatttacc |
382 |
Q |
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| T |
27241492 |
tgaatcaatgtgtcaccattcttcttaatgcaattcaaaatggtgagaggaagaaatttgatttacc |
27241558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 329 - 402
Target Start/End: Original strand, 27249111 - 27249183
Alignment:
| Q |
329 |
caccattctccttaatgcaattcaaaatggggagaggaagaaatttgatttaccaaagcaagagtttgacaaat |
402 |
Q |
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| T |
27249111 |
caccattcttcttaatgcaattcaaaatggcgagaggaagaaattcgattaacccaag-aagagtttgtcaaat |
27249183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 27257795 - 27257869
Alignment:
| Q |
14 |
tgaatacttgcaagagaatttgaagttaagttggattgtaatcgatccaactcaaaagcatgcagctaacttgtt |
88 |
Q |
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| T |
27257795 |
tgaatatttgcaagaaaatttgaggttgagttgggttgttatcgatccaactcgaaagcgtgcagcaaagttgtt |
27257869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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