View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5172-Insertion-10 (Length: 395)
Name: NF5172-Insertion-10
Description: NF5172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5172-Insertion-10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 5 - 395
Target Start/End: Complemental strand, 41705282 - 41704892
Alignment:
| Q |
5 |
acagaaccaaactgtggcgatccattctatagacttcgttgcgatcctcattctcaaaagctttactttgacactctcaatggcagttcctatgttgtac |
104 |
Q |
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| T |
41705282 |
acagaaccaaactgtggcgatccattctatagacttcgttgtgatcctcattctcaaaagctttactttgacactctcaatggcagttcctatgttgtac |
41705183 |
T |
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| Q |
105 |
taagaatcatgtcttcgatccagcgtatggtgttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaatggtatttg |
204 |
Q |
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| T |
41705182 |
taagagtcatgtcttcgatccagcgtatggtgttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaatggtatttg |
41705083 |
T |
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| Q |
205 |
gttaaatcagtcacttcctttcaacataacttcatccaacacagtgttcattttcaactgttcccctcgtctcttggtttctcctcttaactgctcttcc |
304 |
Q |
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| T |
41705082 |
gttaaatcagtcacttcctttcaacataacttcatccaacacagtgttcattttcaactgttcccctcgtctcttggtttctcctcttaactgctcttcc |
41704983 |
T |
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| Q |
305 |
tctagtatttgtcaccgttacttggaaaattcaggtcatgttgacacaaatcgagcacttgagtgtgcaagtggtcttcacccttgttgca |
395 |
Q |
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| T |
41704982 |
tctagtatttgtcaccgttacttggaaaattcaggtcaagttgacacaaatcgagcacttgagtgtgcaagtggtcttcacccttgttgca |
41704892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 1453360 - 1453265
Alignment:
| Q |
118 |
ttcgatccagcgtatggtgttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaatggtatttggttaaatca |
213 |
Q |
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| T |
1453360 |
ttcgatccaacgcatggtggtgcagccacaaccttggttacctggttcatgtgtcacacaaggcatgttggtaagcaatgatatttacttaaatca |
1453265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 1465052 - 1464957
Alignment:
| Q |
118 |
ttcgatccagcgtatggtgttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaatggtatttggttaaatca |
213 |
Q |
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| T |
1465052 |
ttcgatccaacgcatggtggtgcagccacaaccttggttacctggttcatgtgtcacacaaggcatgttggtaagcaatgatatttacttaaatca |
1464957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 7564146 - 7564110
Alignment:
| Q |
150 |
cttggttacccggttcatgtgtcacacaagacatgcc |
186 |
Q |
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| T |
7564146 |
cttggttacctggttcatgtgttacacaagacatgcc |
7564110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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