View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5172-Insertion-4 (Length: 334)
Name: NF5172-Insertion-4
Description: NF5172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5172-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 8 - 331
Target Start/End: Original strand, 25813421 - 25813739
Alignment:
| Q |
8 |
ataaccacataggtagtggtggagtgttagagcacaccgcgtcgtaaccagccttgtagtacttgtttaaggtctctagggttacacccggagagagagg |
107 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
25813421 |
ataaccacataggtagtggtggagtgtt--tacgcaccgcgtcgtaaccagccttgtagtacttgtttatggtctctagggttacacctggagagagagg |
25813518 |
T |
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| Q |
108 |
ttcgtttaagagttcaactgcatatagactagggttttttgtatacctgcgtcgacgcatagaaatatatgataaatgtggtaagtaaagtatcaatttg |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25813519 |
ttcgtttaagagttcaactgcatatagactagggttttttgtatacctg---cgacgcatagaaatatatgataaatgtggtaagtaaagtatcaatttg |
25813615 |
T |
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| Q |
208 |
aaacatataatgtgtggattattatgaaaaaatgtacaaatattatatgtattaaccttgctgttaggaagcttataacatcaactgtttgctgaatatt |
307 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25813616 |
aaacatatgatgtatggattattatgaaaaaatgtacaaatagtatatgtattaaccttgctgttaggaagcttataacatcaactgtttgctgaatatt |
25813715 |
T |
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| Q |
308 |
ttcatctgattgtccccattcttg |
331 |
Q |
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| T |
25813716 |
ttcatctgattgtccccattcttg |
25813739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 25788502 - 25788642
Alignment:
| Q |
8 |
ataaccacataggtagtggtggagtgttagagcacaccgcgtcgtaaccagccttgtagtacttgtttaaggtctctagggttacacccggagagagagg |
107 |
Q |
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|||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
25788502 |
ataaccacataggtagtggtggagtgtt--tacgcaccgcgtagtaaccagccttgtagtacttgtttatggtctctagggttacacctggagagagagg |
25788599 |
T |
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| Q |
108 |
ttcgtttaagagttcaactgcatatagactagggttttttgtatacct |
155 |
Q |
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| T |
25788600 |
ttcgtttaagagttca-----atatagactagggttttttgtatacct |
25788642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 25759258 - 25759103
Alignment:
| Q |
8 |
ataaccacataggtagtggtggagtgttagagcacaccgcgtcgtaaccagc-----cttgtagtacttgtttaaggtctctagggttacacccg--gag |
100 |
Q |
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|||||||||||||||||||||||||||| | ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| | ||| |
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| T |
25759258 |
ataaccacataggtagtggtggagtgtt--tacgcaccgcgccgtaaccagccttagcttgtagtacttgtttaaggtctctagggttacacttggagag |
25759161 |
T |
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| Q |
101 |
agagaggttcgtttaagagttcaactgcatatagactagggttttttgtatacctgcg |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25759160 |
agagaggttcgtttaagagttcaactgcatatagactagggttttttgtatacctgcg |
25759103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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