View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5172-Insertion-7 (Length: 501)

Name: NF5172-Insertion-7
Description: NF5172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5172-Insertion-7
NF5172-Insertion-7
[»] chr6 (1 HSPs)
chr6 (7-501)||(10316460-10316954)


Alignment Details
Target: chr6 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 7 - 501
Target Start/End: Complemental strand, 10316954 - 10316460
Alignment:
Q  7 aaaaagactacttcattttccaatcttttaaggatgaactcaataggtgatgatttattggatttttcttcactcccacctcttgtggatcctcctttta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10316954 aaaaagactacttcattttccaatcttttaaggatgaactcaataggtgatgatttattggatttttcttcactcccacctcttgtggatcctcctttta 10316855  T
Q  107 gcaacaataccattgatgatcatgacttcaaaggaatcaattcatcaccttcatcatcaaatggttattgttttccaagctacttaatgaacaatgaaat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10316854 gcaacaataccattgatgatcatgacttcaaaggaatcaattcatcaccttcatcatcaaatggttattgttttccaagctacttaatgaacaatgaaat 10316755  T
Q  207 taatctcacaaataattatcatgctaccaaccaagggaatttcaatggtccattaatgcaaagtagctcatcttcatcacatcaacttcaacctcaaatc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10316754 taatctcacaaataattatcatgctaccaaccaagggaatttcaatggtccattaatgcaaagtagctcatcttcatcacatcaacttcaacctcaaatc 10316655  T
Q  307 caaattccaaacacacccttgaatgagaacatgttatcaaattattcttacatgaatcaagggaataataacaatggttacatttatggattggaaaata 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10316654 caaattccaaacacacccttgaatgagaacatgttatcaaattattcttacatgaatcaagggaataataacaatggttacatttatggattggaaaata 10316555  T
Q  407 aagagtgcaagatggagcaattctccaccaacaattctatggtgagcatttcacaagacacatgtttgagcaatgacataaacaatgaaacatca 501  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10316554 aagagtgcaagatggagcaattctctaccaacaattctatggtgagcatttcacaagacacatgtttgagcaatgacataaacaatgaaacatca 10316460  T

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