View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5172-Insertion-8 (Length: 418)

Name: NF5172-Insertion-8

Description: NF5172

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF5172-Insertion-8

[»] chr7 (4 HSPs)

[»] scaffold1640 (1 HSPs)

Alignment Details

Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 4)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 287; E-Value: 1e-161

Query Start/End: Original strand, 6 - 418

Target Start/End: Complemental strand, 31980239 - 31979833

Alignment:

Q	6	cagacccttcagccatttatgagttcctcatgaaacaacaaacttcatcatnnnnnnnnnnnnnnnnnnnnagaacaaccagaagatcatcacagccaca	105	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31980239	cagacccttcagccatttatgagttcctcatgaaacaacaaacttcatcatcaccatcaccaccaccaccaagaacaaccagaagatcatcacagccaca	31980140	T

Q	106	acaaccttcaagaatttttcagtgtcaatattgtcatcgaaaattctacacttctcaagctcttggtggtcaccaaaatgctcacaaacaagaaagagct	205	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31980139	acaaccttcaagaatttttcagtgtcaatattgtcaccgaaaattctacacttctcaagctcttggtggtcaccaaaatgctcacaaacaagaaagagct	31980040	T

Q	206	gctgctagatcaaaaaccatcaacctcaacaccac------caccaacaacgttgttcctttttcaccaccaccacagtcatatgtttctgaacaacatg	299	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31980039	gctgctagatcaaaaaccatcaacctcaacaccaccaacaacaacaacaacgttgttcctttttcaccaccaccacagtcatatgtttctgaacaacatg	31979940	T

Q	300	aacaaggtggtttctttcatcatcatcaacatcattacccttattggcaacaaatggaacctatacagtttcaaacaccacaacaacatcatgttgaagc	399	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31979939	aacaaggtggtttcttt------------catcattacccttattggcaacaaatggaacctatacagtttcaaacaccacaacaacatcatgttgaagc	31979852	T

Q	400	agcaacaaacacttttcat	418	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31979851	agcaacaaacacttttcat	31979833	T

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Target: chr7; HSP #2

Raw Score: 36; E-Value: 0.00000000004

Query Start/End: Original strand, 146 - 189

Target Start/End: Complemental strand, 25769354 - 25769311

Alignment:

Q	146	aaattctacacttctcaagctcttggtggtcaccaaaatgctca	189	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	25769354	aaattctccacttctcaagctcttggaggtcaccaaaatgctca	25769311	T

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Target: chr7; HSP #3

Raw Score: 36; E-Value: 0.00000000004

Query Start/End: Original strand, 146 - 189

Target Start/End: Complemental strand, 25774935 - 25774892

Alignment:

Q	146	aaattctacacttctcaagctcttggtggtcaccaaaatgctca	189	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	25774935	aaattctccacttctcaagctcttggaggtcaccaaaatgctca	25774892	T

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Target: chr7; HSP #4

Raw Score: 30; E-Value: 0.0000001

Query Start/End: Original strand, 149 - 210

Target Start/End: Original strand, 33781938 - 33781999

Alignment:

Q	149	ttctacacttctcaagctcttggtggtcaccaaaatgctcacaaacaagaaagagctgctgc	210	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\| \|\| \|\|\|\|\| \| \|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	33781938	ttctactcttctcaagctcttggtggccaccagaacgcacacaagctagagagagctgctgc	33781999	T

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Target: scaffold1640 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)

Name: scaffold1640

Description:

Target: scaffold1640; HSP #1

Raw Score: 36; E-Value: 0.00000000004

Query Start/End: Original strand, 146 - 189

Target Start/End: Original strand, 542 - 585

Alignment:

Q	146	aaattctacacttctcaagctcttggtggtcaccaaaatgctca	189	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	542	aaattctccacttctcaagctcttggaggtcaccaaaatgctca	585	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]