View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5172_high_2 (Length: 374)
Name: NF5172_high_2
Description: NF5172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5172_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 10 - 355
Target Start/End: Original strand, 41629794 - 41630139
Alignment:
| Q |
10 |
aagaatatgattaccacatcttaactacaacataatataaatttaatgacctagaacaagaagaggcgtttatttagtattttggtagttttatgcnnnn |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41629794 |
aagaatatgattaccacatcttaactacaacataatataaatttaatgacctagaacaagaagaggcgtttatttagtattttggtagttttatgctttt |
41629893 |
T |
|
| Q |
110 |
nnngcagagtcacagataagcatcaaaattcaaaggatgcagatggtgctgcatgttttaagagacggcgggtcctgatggaaaaacacgcgagtaggag |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41629894 |
tttgcagagtcacagataagcatcaaaattcaaaggatgcagatggtgctgcatgttttaagagacggcgggtcctgatggaaaaacacgcgagtaggag |
41629993 |
T |
|
| Q |
210 |
tgaaaatgaacccttacctaagcaatgccataataatggtaacattaggccttataatgaattataagatgagactaattacatttttggctcactgatt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41629994 |
tgaaaatgaacccttacctaagcaatgccataataatggtaacattaggccttataatgaattataagatgagactaattacatttttggctcactgatt |
41630093 |
T |
|
| Q |
310 |
tctcacaaatgcttctttatcacggtcatgaaacagctatgaatag |
355 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41630094 |
tctcacaaatgtttctttatcacggtcatgaaacagctatgaatag |
41630139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 6771108 - 6771063
Alignment:
| Q |
202 |
agtaggagtgaaaatgaacccttacctaagcaatgccataataatg |
247 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
6771108 |
agtaggagtgataatgaacccttacctaagcaattccataataatg |
6771063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University