View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5172_low_4 (Length: 333)
Name: NF5172_low_4
Description: NF5172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5172_low_4 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 51 - 324
Target Start/End: Original strand, 15755312 - 15755580
Alignment:
| Q |
51 |
ttcttcgtttcactgtttcacgtatcatcgccttcgtctttcttcatactctattttctcaattttactactttctgcttcgtcttcatcatgcctccaa |
150 |
Q |
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| T |
15755312 |
ttcttcgtttcaccgtttcatgcatcatcgccttcggctttcttcatactctgttttctcaattctactactctctgcttcgtcctcatcatgcctccaa |
15755411 |
T |
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| Q |
151 |
gacaagctcctcaagtggttcaacggaacactgattcaccttactacgtgcatccaagtgaaaatcctggctctgtgttagttacgcctcttcttgacgg |
250 |
Q |
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| T |
15755412 |
gagaagatcctcaagttgttcaaccaaacactgattcaccttactacatgcatccaagtgaaaatcctggctct-tgttagttacacctcttcttgacgg |
15755510 |
T |
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| Q |
251 |
ttctaactacctcgcatggcatcgttctatgaaatgcgctttaggcgccaagaacaagctttcctttgatgatg |
324 |
Q |
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| T |
15755511 |
ttctaactacctc----ggcatcattctatgaaacgcgctttaggcgccaagaacaagctttcctttgttgatg |
15755580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 15755210 - 15755270
Alignment:
| Q |
1 |
tttcatcttttctcaattcatctcgatttcgtgaagaatgacaccgattattcttcgtttc |
61 |
Q |
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| T |
15755210 |
tttcatcttttctcaattcatctcgatttcgtgaagaatcacaccgattcttcttcgtttc |
15755270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 51 - 218
Target Start/End: Complemental strand, 6130 - 5962
Alignment:
| Q |
51 |
ttcttcgtttcactgtttcacgtatcatcgccttcgtctttcttcatactctattttctcaattttactacttt-ctgcttcgtcttcatcatgcctcca |
149 |
Q |
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| T |
6130 |
ttcttcttttcaccgtttcacgcatcatctacttcgtttttcttcttcctctgttttctcaattctactacttttctgcttcgtcctcatcatgcctcca |
6031 |
T |
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| Q |
150 |
agacaagctcctcaagtggttcaacggaacactgattcaccttactacgtgcatccaagtgaaaatcct |
218 |
Q |
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| T |
6030 |
agacaagctcctcgggttattcaaccaaacactgattcaccttactatgtgcattcgagtgaaaatcct |
5962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 133 - 324
Target Start/End: Original strand, 17118153 - 17118344
Alignment:
| Q |
133 |
tcttcatcatgcctccaagacaagctcctcaagtggttcaacggaacactgattcaccttactacgtgcatccaagtgaaaatcctggctctgtgttagt |
232 |
Q |
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| T |
17118153 |
tcttcatcatccctcctcgtcaagctcctcagattgttcaatcaaacactgattcaccgtattatgtgcatcctaatgaaggaccaagctatgtgatagt |
17118252 |
T |
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| Q |
233 |
tacgcctcttcttgacggttctaactacctcgcatggcatcgttctatgaaatgcgctttaggcgccaagaacaagctttcctttgatgatg |
324 |
Q |
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||| ||||||||||| ||||||||||||||||||||||||||||||||||| || | ||||| || |||||||| |||||||||| ||||| |
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| T |
17118253 |
tacacctcttcttgatggttctaactacctcgcatggcatcgttctatgaagcgcccattaggagcgaagaacaaactttcctttgttgatg |
17118344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 283
Target Start/End: Complemental strand, 13139970 - 13139865
Alignment:
| Q |
178 |
acactgattcaccttactacgtgcatccaagtgaaaatcctggctctgtgttagttacgcctcttcttgacggttctaactacctcgcatggcatcgttc |
277 |
Q |
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| T |
13139970 |
acactgattttccttattacgtgcatcctagtgaaggacctaactttgtgctagttacgcctcttcttgatggttccaactacctcgcatgaaatcgttc |
13139871 |
T |
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| Q |
278 |
tatgaa |
283 |
Q |
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| T |
13139870 |
tatgaa |
13139865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 26628696 - 26628758
Alignment:
| Q |
249 |
ggttctaactacctcgcatggcatcgttctatgaaatgcgctttaggcgccaagaacaagctt |
311 |
Q |
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| T |
26628696 |
ggttctaactacctcgcatggagtcgttctatgcaacgtgctttaggtgccaagaataagctt |
26628758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 26734672 - 26734734
Alignment:
| Q |
249 |
ggttctaactacctcgcatggcatcgttctatgaaatgcgctttaggcgccaagaacaagctt |
311 |
Q |
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| T |
26734672 |
ggttctaactacctcgcatggagtcgttctatgcaacgtgctttaggtgccaagaataagctt |
26734734 |
T |
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