View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5172_low_5 (Length: 302)
Name: NF5172_low_5
Description: NF5172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5172_low_5 |
 | |
|
| [»] chr4 (5 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 10 - 302
Target Start/End: Original strand, 130281 - 130573
Alignment:
| Q |
10 |
aagaatatgtgaatgacgaattcaaaagaagctttcttcatctccgtaaggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatca |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
130281 |
aagaaaatgtgaatgacgaattcaaaagaagctttcttcatctccgtaaggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatca |
130380 |
T |
|
| Q |
110 |
caatatcctcaatacgctctaagtacatttctaatacattgtgaccattgataggagatgatactagttgtttaaaacgtccgcgttctttatgtagaat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
130381 |
caatatcctcaatacgctctaagtacatttctaatacattgtgaccattgataggagatgatactagttgtttaaaacgtccgcgttctttatgtagaat |
130480 |
T |
|
| Q |
210 |
cttactatcgcctaattcaagggcggattttggataaccaatcttaaaagtcacttcatcaattaggactttcttgcatatagcaggtgcaat |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
130481 |
cttactatcgcctaattcaagggcggattttggataaccaatcttaaaagtcacttcatctattaggactttcttgcatatagcaggtgcaat |
130573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 10 - 302
Target Start/End: Original strand, 150114 - 150406
Alignment:
| Q |
10 |
aagaatatgtgaatgacgaattcaaaagaagctttcttcatctccgtaaggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatca |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
150114 |
aagaaaatgtgaatgacgaattcaaaagaagcttttctcatctccataaggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatca |
150213 |
T |
|
| Q |
110 |
caatatcctcaatacgctctaagtacatttctaatacattgtgaccattgataggagatgatactagttgtttaaaacgtccgcgttctttatgtagaat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| | |||||| ||||||||||||| ||| ||| ||| | |
|
|
| T |
150214 |
caatatcctcaatacgctctaagtacatttctaatacattccgaccaatgataggagccgcgactagtcgtttaaaacgtccattttcactatttagtaa |
150313 |
T |
|
| Q |
210 |
cttactatcgcctaattcaagggcggattttggataaccaatcttaaaagtcacttcatcaattaggactttcttgcatatagcaggtgcaat |
302 |
Q |
| |
|
|||||| | ||| |||| ||| | ||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
150314 |
cttactttttgctagttcagtggcagcttttggataaccaattttaaaggtcacttcatcaattaagactttcttgcatatagcaggtgcaat |
150406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 10304485 - 10304346
Alignment:
| Q |
10 |
aagaatatgtgaatgacgaattcaaaagaagctttcttcatctccgtaaggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatca |
109 |
Q |
| |
|
||||| |||||||||| ||||| |||||||||||| |||||||| ||||||||||||||||||||||| || || |||||||||| ||||||||||| |
|
|
| T |
10304485 |
aagaaaatgtgaatgatgaatttaaaagaagcttttctcatctccacgaggaactcaacagggtgtttcatactggataattcttctaacttgttgatca |
10304386 |
T |
|
| Q |
110 |
caatatcctcaatacgctctaagtacatttctaatacatt |
149 |
Q |
| |
|
||||||| |||||||| |||||||| || |||||||||| |
|
|
| T |
10304385 |
caatatcttcaatacgttctaagtattttactaatacatt |
10304346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 892474 - 892416
Alignment:
| Q |
58 |
aggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatcacaatatc |
116 |
Q |
| |
|
|||||||||| |||||||| |||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
892474 |
aggaactcaagagggtgttccatgatggataattcttctagcttgttgatcacaatatc |
892416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 10304258 - 10304193
Alignment:
| Q |
237 |
ttttggataaccaatcttaaaagtcacttcatcaattaggactttcttgcatatagcaggtgcaat |
302 |
Q |
| |
|
||||||||||||| |||||| | || |||||||| || ||||||||||||||| |||||||||| |
|
|
| T |
10304258 |
ttttggataaccatgcttaaagtttacatcatcaatcagaactttcttgcatatatcaggtgcaat |
10304193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 42 - 302
Target Start/End: Original strand, 3959369 - 3959629
Alignment:
| Q |
42 |
tttcttcatctccgtaaggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatcacaatatcctcaatacgctctaagtacatttct |
141 |
Q |
| |
|
|||| ||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
3959369 |
tttcctcatctctttaagaaactcaacagggtgtttcatgctagacaattcttcaagcttgttgatcacaatatcctcaatacgctctagatacattgtt |
3959468 |
T |
|
| Q |
142 |
aatacattgtgaccattgataggagatgatactagttgtttaaaacgtccgcgttctttatgtagaatcttactatcgcctaattcaagggcggattttg |
241 |
Q |
| |
|
||||||||| ||| ||||||| | |||||| |||| ||||||||| |||| |||| ||| | | || | | ||| | || | || ||||| |
|
|
| T |
3959469 |
gatacattgttaccggcaataggagccgtgactagtcgttttaaacgtccgtgttcattatttagtaccctattgtatgctagtacagtgatggcttttg |
3959568 |
T |
|
| Q |
242 |
gataaccaatcttaaaagtcacttcatcaattaggactttcttgcatatagcaggtgcaat |
302 |
Q |
| |
|
||||||||| |||||| || ||||||||| |||||||||||||||| ||||| ||| |||| |
|
|
| T |
3959569 |
gataaccaagcttaaaggttacttcatcatttaggactttcttgcacatagctggtacaat |
3959629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University