View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5172_low_6 (Length: 274)
Name: NF5172_low_6
Description: NF5172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5172_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 4586512 - 4586750
Alignment:
| Q |
20 |
tctttcattgatttactaatcattctatcgttattattcctatttttcatgataataagattatttcatgctagattcctcgcactgttattatttttaa |
119 |
Q |
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| T |
4586512 |
tctttcattgatttactaatcattctatcgttattattcctatttttcatgataataagattatttcatgctagattcctcgcactgttattatttttaa |
4586611 |
T |
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| Q |
120 |
agatcaaaattgaagatgcatagaatttagggatctgcagtgaaccatttatactttcttctgccaactacctcaaactatatttagtgttttcgttaag |
219 |
Q |
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| T |
4586612 |
agatcataattgaagatgcatagaatttagggatctgcagtgaactatttatactttcttctgctaactacctcaaactatatttagtgttttcgttaag |
4586711 |
T |
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| Q |
220 |
tagtgttaatgttaactgtgagatcaattatgttgctat |
258 |
Q |
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|||||||||||||||||| ||||||||||| |||||||| |
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| T |
4586712 |
tagtgttaatgttaactgcgagatcaattaagttgctat |
4586750 |
T |
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