View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5172_low_7 (Length: 258)
Name: NF5172_low_7
Description: NF5172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5172_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 130651 - 130871
Alignment:
| Q |
16 |
atattaaggatttgtttgttttctaaaattattttaattcttcctattatcatcatgccatgaatggaagattaatgtatttaacaattgtgataaagaa |
115 |
Q |
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| T |
130651 |
atattaaggattcgtttgttttctaaaattattttaattcttcctattatcatcatgccatgaatggaagattaatgtatttaacaattgtgataaagaa |
130750 |
T |
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| Q |
116 |
aatgaaagaccaataaaggagagttcattttttaatatattgaaaaaagtgttgatgattgaagggaacatgtgatcccctttgaagaagggttgagggt |
215 |
Q |
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| T |
130751 |
aatgaaagaccaataaaggagagttcattttttaatatattgaaaatagtgttgatgattgaagggaacatgtgatcccctttgaaga-------agggt |
130843 |
T |
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| Q |
216 |
tgaacaaggtatgaacattgatgattgt |
243 |
Q |
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| T |
130844 |
tgaacaaggtatgaacattgatgattgt |
130871 |
T |
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