View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5173-Insertion-1 (Length: 876)
Name: NF5173-Insertion-1
Description: NF5173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5173-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 803; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 803; E-Value: 0
Query Start/End: Original strand, 8 - 870
Target Start/End: Complemental strand, 26276583 - 26275725
Alignment:
| Q |
8 |
tgtagaacccggtacttaaagaatggaaagcctatcacctacaatagagcgtcttcagtttggtcgggaatgagagtccatctcagaatgattgctgagc |
107 |
Q |
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| T |
26276583 |
tgtagaacccggtacttaaagaatggaaagcctatcacctacaatagagcgtcttcattttggtcgggaatgatagtccatctcagaatgaatgctgagc |
26276484 |
T |
|
| Q |
108 |
aatcctcatggtcaataggtaatgggaacactgtcaacttctggacagataaatggttagaacaatctattgtggaatctcttaatatccctctgcacat |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26276483 |
aatcctcatggtcaataggtaatgggaacactgtcaacttctggacagacaaatggttagaacaatctattgtggaatctcttaatatccctctgcacat |
26276384 |
T |
|
| Q |
208 |
gcaccctgcccttaacatgaaggtagcagattacattctggatggtaattggaatatccccatgtatctgatacaaaagtctaaagagttagcaaagcaa |
307 |
Q |
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| T |
26276383 |
gcaccctgcccttaacatgaaggtagcagattacattctggatggtaattggaatatccccatgtatctgatacaaaagtctaaagagttagcaaagcaa |
26276284 |
T |
|
| Q |
308 |
attctcacggttaccctctctattgatgattcccatgataggctgaattggagggcctccgttgatggaaaacttactagcaaaattgcgcctataacac |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26276283 |
attctcacggttaccctctctattgatgattcccatgataggctgaattggagggcctctgttgatggaaaacttactagcaaaattgcgcctataacac |
26276184 |
T |
|
| Q |
408 |
cttgcgcatctttggtcctaaggtgaggtggtgtaagttagtttggaacaatttcgtccctccctctaggtctttcattttctggagattagctaacaac |
507 |
Q |
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| T |
26276183 |
cttgcgcatctttggtcctaaggtgaggtggtgtaagttagtttggaacaatttcgtccct-cctctaggtctttcattttctggagattagctaacaac |
26276085 |
T |
|
| Q |
508 |
aagatgccgactgatgagaatcttacgaaaaggggctgtaagattgtgtcaattttctgtttctgtcatcaacatgaagaaaaatccactcatatattct |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26276084 |
aagatgccgactgatgagaatcttacgaaaaggggctgtaagattgtgtcaattttctgtttctgtcatcaacatgaagaaaaatccactcatatattct |
26275985 |
T |
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| Q |
608 |
tcaggctgcccagaaacgcagaagctttggcagaggttgtgtactgggattgaccaaggcccggactgctccggtggctgaatgtgattgacagttgtgt |
707 |
Q |
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| T |
26275984 |
tca-gctgcccagaaacgcagaagctttggcagaggttgtgtactgggattgaccaaggcccggactgctccggtggctgaatgtgattgacagttgtgt |
26275886 |
T |
|
| Q |
708 |
tggtaattggagcgaacagggttcagcaggtgttgatagcagcagttctgcacattatctggaggacttggatagaacgtaatgatagatatttcaataa |
807 |
Q |
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| T |
26275885 |
tggtaattgaagcaaaca-ggttcagcaggtgttgatagcagcagttctgcacattatctggaggacttggatagaacgtaatgatagatatttcaataa |
26275787 |
T |
|
| Q |
808 |
taatgcgcattcgatggaacatctgtttcggagtgttattggtggaagtaggctgtagcttca |
870 |
Q |
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| T |
26275786 |
taatgcgcattcgatggaacatctgtttcggagtgttatt-gtggaagtaggctgtagcttca |
26275725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 508 - 624
Target Start/End: Complemental strand, 43673526 - 43673411
Alignment:
| Q |
508 |
aagatgccgactgatgagaatcttacgaaaaggggctgtaagattgtgtcaattttctgtttctgtcatcaacatgaagaaaaatccactcatatattct |
607 |
Q |
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|||||||| || ||||| ||||||| |||| | ||||| | ||||| | |||| ||||||||||||||||||||||||| |||| |||||| |||| |
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| T |
43673526 |
aagatgccaacggatgaaaatcttaggaaacgaggctgcacaattgttttgatttgttgtttctgtcatcaacatgaagaaacctccagtcatattttct |
43673427 |
T |
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| Q |
608 |
tcaggctgcccagaaac |
624 |
Q |
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||| ||||||||||||| |
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| T |
43673426 |
tca-gctgcccagaaac |
43673411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 703 - 829
Target Start/End: Complemental strand, 39397955 - 39397830
Alignment:
| Q |
703 |
tgtgttggtaattggagcgaacagggttcagcaggtgttgatagcagcagttctgcacattatctggaggacttggatagaacgtaatgatagatatttc |
802 |
Q |
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|||||||||||||||||| || || | ||||| || || |||||||| |||||||||| | |||| || || ||||||||||||||| | |||||| |
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| T |
39397955 |
tgtgttggtaattggagcaaagcgg-tgcagcaagtcttaatagcagcggttctgcacacggtttggaagatttagatagaacgtaatgagcgttatttc |
39397857 |
T |
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| Q |
803 |
aataataatgcgcattcgatggaacat |
829 |
Q |
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|||||||| ||| ||||| |||||||| |
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| T |
39397856 |
aataataaggcgaattcgttggaacat |
39397830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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