View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5173-Insertion-10 (Length: 450)
Name: NF5173-Insertion-10
Description: NF5173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5173-Insertion-10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 8 - 450
Target Start/End: Complemental strand, 48528276 - 48527834
Alignment:
| Q |
8 |
gatattgatacggacagggttactacacaagaaacactccacacaagatcgtttttcgaagaaaataaaaatattgtttagcatatttgattttcagttg |
107 |
Q |
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| T |
48528276 |
gatattgatacggacagggttcctacacaagaaacactccacacaagatcgtttttcgaagaaaataaaaatattgtttagcatatttgattttcagttg |
48528177 |
T |
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| Q |
108 |
ggaaaatctcaaatcatgttataaaatgggacgcggccatataaggatagatgtttattttaggtgatataataagaaccattcacttcataaaaaacaa |
207 |
Q |
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| T |
48528176 |
ggaaaatctcaaatcatgttataaaatgggacgcggccatataaggatagatgtttattttaggtgatataataagaaccattcacttcataaaaaacaa |
48528077 |
T |
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| Q |
208 |
attattgttttgtttgtttattttaggtgattttaaaattaaaacaagagggtttatgtagtgcatcctgattcaccaatttcgtgtttggttgataaca |
307 |
Q |
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| T |
48528076 |
attattgttttgtttgtttattttaggtgattttaaaattaaaacaagagggtttatgtagtgcatcctgattcaccaatttcgtgtttggttgataaca |
48527977 |
T |
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| Q |
308 |
aaaacgttttagttctaaccaccgcatattgagaatagtaatgtgtaaattaggttctaaatgaaggttggaaaatctattcacagaataaataaaggat |
407 |
Q |
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| T |
48527976 |
aaaacgttttagttctaaccaccgcatattgagaatagtaatgtgtaaattaggttctaaatgaaggttggaaaatctattcacagaataaataaaggat |
48527877 |
T |
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| Q |
408 |
ttaaggcttctttcctttacaaccatctcatagcttgttcctt |
450 |
Q |
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| T |
48527876 |
ttaaggcttctttcctttacaaccatctcatagcttgttcctt |
48527834 |
T |
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