View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5173-Insertion-12 (Length: 238)

Name: NF5173-Insertion-12
Description: NF5173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5173-Insertion-12
NF5173-Insertion-12
[»] chr8 (21 HSPs)
chr8 (25-238)||(19186661-19186874)
chr8 (25-238)||(15982621-15982834)
chr8 (25-238)||(16005848-16006061)
chr8 (25-238)||(15954324-15954537)
chr8 (25-238)||(19149582-19149794)
chr8 (42-238)||(15964142-15964338)
chr8 (57-235)||(15942793-15942971)
chr8 (84-235)||(19190283-19190434)
chr8 (61-122)||(15977170-15977231)
chr8 (33-108)||(16050696-16050771)
chr8 (73-144)||(19453832-19453903)
chr8 (73-144)||(19527172-19527243)
chr8 (72-123)||(19552158-19552209)
chr8 (72-123)||(19580479-19580530)
chr8 (131-227)||(16050595-16050691)
chr8 (72-144)||(19338804-19338876)
chr8 (72-144)||(19356831-19356903)
chr8 (72-123)||(19537865-19537916)
chr8 (72-144)||(19378370-19378442)
chr8 (72-144)||(19406888-19406960)
chr8 (72-144)||(19501136-19501208)
[»] chr1 (1 HSPs)
chr1 (72-123)||(36311922-36311973)


Alignment Details
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 25 - 238
Target Start/End: Original strand, 19186661 - 19186874
Alignment:
Q  25 cattttattaatgatgtttttatattcaatacagggaattctaccttcagggcaagaagtagctgtgaagaaactttcaaaaacatctggacaaggaatg 124  Q
    ||||||||| |||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19186661 cattttattgatgatgcttttatattcaattcagggaattctaccttcggggcaagaagtagctgtgaagaaactttcaaaaacatctggacaaggaatg 19186760  T
Q  125 attgagtttagaaatgaattaacactcattagtaagcttcggcatacaaatcttgttcagctaatcggtcattgcattcacgaacaggagagaatgttga 224  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||| ||||  |||||||||||||    
T  19186761 attgagtttagaaatgaattaacactcatttgtaagcttcagcatacaaatcttgttcaactaatcggtcattgcattcatgaacgagagagaatgttga 19186860  T
Q  225 tctatgagtatatg 238  Q
    ||||||||||||||    
T  19186861 tctatgagtatatg 19186874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 25 - 238
Target Start/End: Complemental strand, 15982834 - 15982621
Alignment:
Q  25 cattttattaatgatgtttttatattcaatacagggaattctaccttcagggcaagaagtagctgtgaagaaactttcaaaaacatctggacaaggaatg 124  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15982834 cattttattaatgaagtttttatattcaattcagggaattctaccttcagggcaagaagtagctgtgaagaaactttcaaaaacttctggacaaggaatg 15982735  T
Q  125 attgagtttagaaatgaattaacactcattagtaagcttcggcatacaaatcttgttcagctaatcggtcattgcattcacgaacaggagagaatgttga 224  Q
    |  |||||||||||||||||||| |||||| ||||||||| |||||| ||||||||||| |||||||||||||||||||| ||||| ||| | || ||||    
T  15982734 accgagtttagaaatgaattaactctcatttgtaagcttcagcataccaatcttgttcaactaatcggtcattgcattcatgaacaagagcgtatattga 15982635  T
Q  225 tctatgagtatatg 238  Q
    ||||||||||||||    
T  15982634 tctatgagtatatg 15982621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 25 - 238
Target Start/End: Original strand, 16005848 - 16006061
Alignment:
Q  25 cattttattaatgatgtttttatattcaatacagggaattctaccttcagggcaagaagtagctgtgaagaaactttcaaaaacatctggacaaggaatg 124  Q
    ||||||||||||  | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16005848 cattttattaattttttttttatattcaattcagggaattctaccttcagggcaagaagtagctgtgaagaaactttcaaaaacttctggacaaggaatg 16005947  T
Q  125 attgagtttagaaatgaattaacactcattagtaagcttcggcatacaaatcttgttcagctaatcggtcattgcattcacgaacaggagagaatgttga 224  Q
    | |||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||| ||||||||||| ||||| ||| | || ||||    
T  16005948 actgagtttagaaatgaattaacactcattagtaagcttcagcatacgaatcttgttcggctaatcggacattgcattcatgaacatgagcgtatattga 16006047  T
Q  225 tctatgagtatatg 238  Q
    ||||||||||||||    
T  16006048 tctatgagtatatg 16006061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 25 - 238
Target Start/End: Original strand, 15954324 - 15954537
Alignment:
Q  25 cattttattaatgatgtttttatattcaatacagggaattctaccttcagggcaagaagtagctgtgaagaaactttcaaaaacatctggacaaggaatg 124  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||     
T  15954324 cattttattaataatgtttttatattcaattcagggaattctaccttcagggcaagaagtagctgtgaagaaactttcacaaacttctggacaaggaatt 15954423  T
Q  125 attgagtttagaaatgaattaacactcattagtaagcttcggcatacaaatcttgttcagctaatcggtcattgcattcacgaacaggagagaatgttga 224  Q
    ||||| |||| ||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| ||||||||||| ||||| ||| | || ||||    
T  15954424 attgaatttaaaaatgaattaacactcatttgtaagcttcagcatacaaatcttgttcggctaatcggacattgcattcatgaacaagagcggatattga 15954523  T
Q  225 tctatgagtatatg 238  Q
    ||||||||||||||    
T  15954524 tctatgagtatatg 15954537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 25 - 238
Target Start/End: Complemental strand, 19149794 - 19149582
Alignment:
Q  25 cattttattaatgatgtttttatattcaatacagggaattctaccttcagggcaagaagtagctgtgaagaaactttcaaaaacatctggacaaggaatg 124  Q
    ||||||||||||||| |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19149794 cattttattaatgatatttt-atatttaattcagggaattctaccttcagggcaagaagtagctgtgaagaaactttcaaaaacttctggacaaggaatg 19149696  T
Q  125 attgagtttagaaatgaattaacactcattagtaagcttcggcatacaaatcttgttcagctaatcggtcattgcattcacgaacaggagagaatgttga 224  Q
    |  ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||| ||||| ||| | || ||||    
T  19149695 acggagtttagaaatgaattaacactcatttgtaagcttcagcatacaaatcttgttcaactaatcggtcattgcattcatgaacaagagcggatattga 19149596  T
Q  225 tctatgagtatatg 238  Q
    ||||||||||||||    
T  19149595 tctatgagtatatg 19149582  T

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Target: chr8; HSP #6
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 42 - 238
Target Start/End: Complemental strand, 15964338 - 15964142
Alignment:
Q  42 ttttatattcaatacagggaattctaccttcagggcaagaagtagctgtgaagaaactttcaaaaacatctggacaaggaatgattgagtttagaaatga 141  Q
    ||||| |||||| |||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15964338 ttttaaattcaacacagggaattctaccttcggagcaagaggtagctgtgaagaaactttcaaaaacatctggacaaggaatgactgagtttagaaatga 15964239  T
Q  142 attaacactcattagtaagcttcggcatacaaatcttgttcagctaatcggtcattgcattcacgaacaggagagaatgttgatctatgagtatatg 238  Q
    ||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||  |||||||||||||||||||||||||||    
T  15964238 attaacactcatttgtaagcttcagcatacaaatcttgttcggctaatcggtcattgcattcatgaacgagagagaatgttgatctatgagtatatg 15964142  T

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Target: chr8; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 57 - 235
Target Start/End: Original strand, 15942793 - 15942971
Alignment:
Q  57 agggaattctaccttcagggcaagaagtagctgtgaagaaactttcaaaaacatctggacaaggaatgattgagtttagaaatgaattaacactcattag 156  Q
    |||||||||||||||| |||||||||||||||||||| | |||||||||| | ||||||||||||||  |||| |||| |||||||||||  |||||  |    
T  15942793 agggaattctaccttctgggcaagaagtagctgtgaaaagactttcaaaatcttctggacaaggaattgttgaatttaaaaatgaattaaatctcatatg 15942892  T
Q  157 taagcttcggcatacaaatcttgttcagctaatcggtcattgcattcacgaacaggagagaatgttgatctatgagtat 235  Q
    |||||| | |||||||||||| ||||||||||| ||||| |||||||| ||||| |||||||| || ||||||||||||    
T  15942893 taagctccagcatacaaatctggttcagctaataggtcactgcattcatgaacaagagagaatattaatctatgagtat 15942971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 84 - 235
Target Start/End: Original strand, 19190283 - 19190434
Alignment:
Q  84 tagctgtgaagaaactttcaaaaacatctggacaaggaatgattgagtttagaaatgaattaacactcattagtaagcttcggcatacaaatcttgttca 183  Q
    |||||||||| | || ||||||| | |||||||||||| | ||||| |||||||| ||||||||||||||  | ||||| | |||||||||||| |||||    
T  19190283 tagctgtgaaaagacattcaaaatcttctggacaaggagttattgaatttagaaacgaattaacactcatctgcaagctccagcatacaaatctggttca 19190382  T
Q  184 gctaatcggtcattgcattcacgaacaggagagaatgttgatctatgagtat 235  Q
    |||    ||||| ||||||||  || | ||  ||||||||||||||||||||    
T  19190383 gctgcaaggtcactgcattcataaagaagaacgaatgttgatctatgagtat 19190434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 15977231 - 15977170
Alignment:
Q  61 aattctaccttcagggcaagaagtagctgtgaagaaactttcaaaaacatctggacaaggaa 122  Q
    |||||||||||| | ||||||||||||||||||||||||||||| ||| |||||||||||||    
T  15977231 aattctaccttctgagcaagaagtagctgtgaagaaactttcaagaacttctggacaaggaa 15977170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 16050771 - 16050696
Alignment:
Q  33 taatgatgtttttatattcaatacagggaattctaccttcagggcaagaagtagctgtgaagaaactttcaaaaac 108  Q
    |||| ||||||||||||| ||||||  ||||| ||| || |||| ||||||||| |||||||||||||||||||||    
T  16050771 taataatgtttttatatttaatacaatgaattatacattgagggtaagaagtagttgtgaagaaactttcaaaaac 16050696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 19453832 - 19453903
Alignment:
Q  73 agggcaagaagtagctgtgaagaaactttcaaaaacatctggacaaggaatgattgagtttagaaatgaatt 144  Q
    |||||||||||| ||||| || | ||||||||||||||||||||||||||| || || || | |||||||||    
T  19453832 agggcaagaagttgctgtaaaaagactttcaaaaacatctggacaaggaattatggaattcaaaaatgaatt 19453903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 19527243 - 19527172
Alignment:
Q  73 agggcaagaagtagctgtgaagaaactttcaaaaacatctggacaaggaatgattgagtttagaaatgaatt 144  Q
    |||||||||||| ||||| || | ||||||||||||||||||||||||||| || || || | |||||||||    
T  19527243 agggcaagaagttgctgtaaaaagactttcaaaaacatctggacaaggaattatggaattcaaaaatgaatt 19527172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 19552209 - 19552158
Alignment:
Q  72 cagggcaagaagtagctgtgaagaaactttcaaaaacatctggacaaggaat 123  Q
    ||||||||||||| ||||| || | |||||||||||||||||||||||||||    
T  19552209 cagggcaagaagttgctgtaaaaagactttcaaaaacatctggacaaggaat 19552158  T

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Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 19580479 - 19580530
Alignment:
Q  72 cagggcaagaagtagctgtgaagaaactttcaaaaacatctggacaaggaat 123  Q
    ||||||||||||| ||||| || | |||||||||||||||||||||||||||    
T  19580479 cagggcaagaagttgctgtaaaaagactttcaaaaacatctggacaaggaat 19580530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 227
Target Start/End: Complemental strand, 16050691 - 16050595
Alignment:
Q  131 tttagaaatgaattaacactcattagtaagcttcggcatacaaatcttgttcagctaatcggtcattgcattcacgaacaggagagaatgttgatct 227  Q
    |||||||| ||| || |||||||| ||||||||  ||||||||||   || || ||||| ||||||||  |||| ||||| ||||||||||||||||    
T  16050691 tttagaaaggaactatcactcatttgtaagcttaagcatacaaattcggtacatctaattggtcattgagttcatgaacaagagagaatgttgatct 16050595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 19338804 - 19338876
Alignment:
Q  72 cagggcaagaagtagctgtgaagaaactttcaaaaacatctggacaaggaatgattgagtttagaaatgaatt 144  Q
    |||| |||||||| ||||| || | |||||||||||||||||||||||||||  | || || |||||||||||    
T  19338804 caggacaagaagttgctgtaaaaagactttcaaaaacatctggacaaggaattgtggaattcagaaatgaatt 19338876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 19356831 - 19356903
Alignment:
Q  72 cagggcaagaagtagctgtgaagaaactttcaaaaacatctggacaaggaatgattgagtttagaaatgaatt 144  Q
    |||| |||||||| ||||| || | |||||||||||||||||||||||||||  | || || |||||||||||    
T  19356831 caggacaagaagttgctgtaaaaagactttcaaaaacatctggacaaggaattgtggaattcagaaatgaatt 19356903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 19537916 - 19537865
Alignment:
Q  72 cagggcaagaagtagctgtgaagaaactttcaaaaacatctggacaaggaat 123  Q
    ||||||||||||| ||||| || | |||||| ||||||||||||||||||||    
T  19537916 cagggcaagaagttgctgtaaaaagactttcgaaaacatctggacaaggaat 19537865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 19378370 - 19378442
Alignment:
Q  72 cagggcaagaagtagctgtgaagaaactttcaaaaacatctggacaaggaatgattgagtttagaaatgaatt 144  Q
    ||||||||||||| ||||| || |  |||||||||||||||| |||||||||  | || |||| |||||||||    
T  19378370 cagggcaagaagttgctgtaaaaaggctttcaaaaacatctgtacaaggaattgtggaatttaaaaatgaatt 19378442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 19406888 - 19406960
Alignment:
Q  72 cagggcaagaagtagctgtgaagaaactttcaaaaacatctggacaaggaatgattgagtttagaaatgaatt 144  Q
    ||||||||||||| ||  | || | ||||||||||||||||||||||||||| || || || | |||||||||    
T  19406888 cagggcaagaagttgccataaaaagactttcaaaaacatctggacaaggaattatggaattcaaaaatgaatt 19406960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 19501208 - 19501136
Alignment:
Q  72 cagggcaagaagtagctgtgaagaaactttcaaaaacatctggacaaggaatgattgagtttagaaatgaatt 144  Q
    |||| |||||||| ||||| || | ||||||||||||||| ||||||||||| || || || | |||||||||    
T  19501208 caggacaagaagttgctgtaaaaagactttcaaaaacatccggacaaggaattatggaattcaaaaatgaatt 19501136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 36311973 - 36311922
Alignment:
Q  72 cagggcaagaagtagctgtgaagaaactttcaaaaacatctggacaaggaat 123  Q
    |||| |||||||| ||| |||| | |||||||||||||||||||||||||||    
T  36311973 caggacaagaagttgctatgaaaagactttcaaaaacatctggacaaggaat 36311922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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