View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5173-Insertion-2 (Length: 873)
Name: NF5173-Insertion-2
Description: NF5173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5173-Insertion-2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 798; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 798; E-Value: 0
Query Start/End: Original strand, 7 - 873
Target Start/End: Original strand, 44960010 - 44960876
Alignment:
| Q |
7 |
agcagcagcactattattcactgacggaaaagtccatataggatcaccaccactcattatttggttattagaatttgcaaccatccatatatttgccgga |
106 |
Q |
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| T |
44960010 |
agcagcagcactattattcactgacggaaaagtccatataggatcaccaccactcattatttggttattagaatttgcaaccatccatatatttgccgga |
44960109 |
T |
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| Q |
107 |
atctgagtatgacttgctggaattgaacctgcacttgattgcatcagataactccccatttgatgttgtaatgatgataaatcttgctcactgccaccac |
206 |
Q |
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| T |
44960110 |
atctgagtatgacttgctggaattgaacctgcacttgattgcatcagataactccccatttgatgttgtaatgatgataaatcttgctcactgccaccac |
44960209 |
T |
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| Q |
207 |
tgctagttcttctttttcttcctcccatggattcttctccacttgtttcagataaatctaacgtggttgatgaagaaggagcgttcgcgttagcgtttga |
306 |
Q |
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| T |
44960210 |
tgctagttcttctttttcttcctcccatggattcttctccacttgtttcagataaatctaacgtggttgatgaagaaggagcgttcgcgttagcgtttga |
44960309 |
T |
|
| Q |
307 |
gtttgtgtttccatctcgaacctcttgtttagcctgcaacatatttgttaggttatttgattggaaattcaaaagcattgaagtgttgttgttgctgttg |
406 |
Q |
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| T |
44960310 |
gtttgtgtttccatctcgaacctcttgtttagcctgcaacatatttgttaggttatttgattggaaattcaaaagcattgaagtgttgttgttgctgttg |
44960409 |
T |
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| Q |
407 |
ttatctgaaggagataaaccaattccaggaaaaagagttcttcgttgttgaagtgagaaattcgggttgaagtaagaagatcttagctgagatggaacag |
506 |
Q |
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| T |
44960410 |
ttatctgaaggagataaaccaattccaggaaaaagagttcttcgttgttgaagtgagaaattcgggttgaagtaagaagatcttagctgagatggaacag |
44960509 |
T |
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| Q |
507 |
acatggatgagcctgaactacgaagtgagatattgagagatgtgaagttagcaggtatagttccagtaccagtggcggctataacagcaggttcagcttg |
606 |
Q |
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| T |
44960510 |
acatggatgagcctgagctacgaagtgagatattgagagatgtgaagttagcaggtatagttccagtaccagtggcggctataacagctggttcagcttg |
44960609 |
T |
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| Q |
607 |
ttgaagaagccattcaatggtttcaccatcagatttatggccaagttcgcgtgtaagctgaaaaactctagcagcacaaagtgccggcattcggatgcgg |
706 |
Q |
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| T |
44960610 |
ttgaagaagccattcaatggtttcaccatcagatttatggccaagttcgcgtgtaagctgaaaaactctagcagcacaaagtgccggcattcggatgcgg |
44960709 |
T |
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| Q |
707 |
cggccacgggccttctactttggtatgacgggtctttggtggaagttcttttcggaggagg-tttttgttggcagggtcagaggttgttggtgttgatgc |
805 |
Q |
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| T |
44960710 |
cggccac-ggccttctactttggtatgac-ggtctttggtggaagttcttttcggaggaggttttttgttggcagggtcagaggttgttggtgttgatgc |
44960807 |
T |
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| Q |
806 |
tggggactagttgg-tggatcgg-ttgaatttgatgtactttgctccgttggtgagattgctaggaatgg |
873 |
Q |
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| |||||||||||| |||||||| ||||||||||||||||| | || |||||||||||||||||| |||| |
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| T |
44960808 |
t-gggactagttggttggatcggtttgaatttgatgtacttggttctgttggtgagattgctagggatgg |
44960876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 599 - 648
Target Start/End: Original strand, 470257 - 470306
Alignment:
| Q |
599 |
tcagcttgttgaagaagccattcaatggtttcaccatcagatttatggcc |
648 |
Q |
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| T |
470257 |
tcagcttgttgaagaagccactcaattgtttcaccatctgatttgtggcc |
470306 |
T |
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