View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5173-Insertion-3 (Length: 825)
Name: NF5173-Insertion-3
Description: NF5173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5173-Insertion-3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 507; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 239 - 825
Target Start/End: Complemental strand, 36656578 - 36655998
Alignment:
| Q |
239 |
gtctgattctgttatctttctgttataggatacgtttgaaagacaccgcgttgttttcacggttggaacttccatcgcatccgtcgctactgctttcatc |
338 |
Q |
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| T |
36656578 |
gtctgattctgttatctttctgttataggatacgtttgaaagacaccgcgttgttttcacggttggaacttccatcgcatccgtcgctactgctttcatc |
36656479 |
T |
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| Q |
339 |
ggtttgcttttaaactctttgctcttaaattaccaatttgnnnnnnnntgaaattgtatgcaaaaaatgaataaaccacatgattgtcctagactttgta |
438 |
Q |
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| T |
36656478 |
ggtttgcttttaaactctttgctcttaaattaccaatttgcccccc--tgaaattgtatgcaaaaaatgaataaaccacatgattgtcctagactttgta |
36656381 |
T |
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| Q |
439 |
aggcactgtgaatattttaaaaatgggctgtgattattatgcttatattttgtatatttgatttttgtttttggttcaaaattgtagggtattcgttgcg |
538 |
Q |
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| T |
36656380 |
ggacactg--aatattttaaaaatgggctgtgattattatgcttatattt-gtatatttgatttttttttttggttcaaaattgtagggtattctttgcg |
36656284 |
T |
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| Q |
539 |
gcatgtacatgaaacaagagttaatgaaaggctccaatccattgaacaagctgtatatatctatgtctatctgctttgattcagtttttaatgttttttg |
638 |
Q |
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| T |
36656283 |
gcatgtacatgaaacaagagttaatgaaaggctccaatccattgaacaagctgtatatatctatgtctatctgctttgattcagtttttaatgttttttg |
36656184 |
T |
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| Q |
639 |
cattacttgctttcatttaattatgctttgtttatgttaatcaatagatgaaaagcaatgtaaatcttcaacattctgaaatcaaagatatcgttggtcg |
738 |
Q |
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| T |
36656183 |
cattacttgctttcatttaattatgctttgtttatgttaatccatagatgaaaagcaatgtaaatcttcgacattctgaaatcaaagatatcgttggtcg |
36656084 |
T |
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| Q |
739 |
tcctggaggggttagtattcctgcttgtgcagccactgccgggaaccaccttacttatcgggtttgtttcatttcccttgagcgttt |
825 |
Q |
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| T |
36656083 |
tcctggaggggttagtattcctgcttgtgcagccactgcc-ggaaccaccttacttatcgggtttgtttcatttcccttgagcgttt |
36655998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 27 - 182
Target Start/End: Complemental strand, 36656777 - 36656622
Alignment:
| Q |
27 |
agtatcttgaatattgtagaatgcgataataagaataatgcagcgattaaggaatttgagatcaagctcaaattcattttcagtcgcaaacgttaaacgc |
126 |
Q |
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| T |
36656777 |
agtatcttgaatattgtagaatgcgataataagaataatgcagcgattaaggaatttgagatcaagctcaaattcattttcagtcgcaaacgttaaacgc |
36656678 |
T |
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| Q |
127 |
aaatatctgaattcatgtgctgctattcaagatacttttcattccaccaaggtccg |
182 |
Q |
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| T |
36656677 |
aaatatctcaattcatgtgctgctattcaagatacttttcattccaccaaggtccg |
36656622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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