View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5173-Insertion-4 (Length: 806)

Name: NF5173-Insertion-4
Description: NF5173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5173-Insertion-4
NF5173-Insertion-4
[»] chr8 (1 HSPs)
chr8 (11-806)||(40722436-40723230)
[»] chr6 (1 HSPs)
chr6 (631-679)||(8053178-8053226)
[»] chr3 (3 HSPs)
chr3 (624-669)||(21195335-21195380)
chr3 (627-673)||(15502695-15502741)
chr3 (627-673)||(15005810-15005856)
[»] chr1 (2 HSPs)
chr1 (624-673)||(11803421-11803470)
chr1 (630-673)||(38756128-38756171)
[»] chr5 (5 HSPs)
chr5 (631-667)||(40555599-40555635)
chr5 (627-673)||(28782688-28782734)
chr5 (626-659)||(28992951-28992984)
chr5 (626-659)||(28996231-28996264)
chr5 (624-673)||(32522755-32522804)
[»] chr4 (1 HSPs)
chr4 (624-679)||(45257659-45257714)
[»] scaffold2122 (1 HSPs)
scaffold2122 (626-659)||(676-709)


Alignment Details
Target: chr8 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 11 - 806
Target Start/End: Original strand, 40722436 - 40723230
Alignment:
Q  11 tcaactagtttttgtggttaaaatgtgtgtgtatatattagcannnnnnnnn-ctccttgttcaaacttcgatgaccccaacttgataagaaaatgttgc 109  Q
    ||||||||||| |||||||||||||||||||||||||||||||          |||||||||||||||||||||  |||||||||||||| |||||||||    
T  40722436 tcaactagtttatgtggttaaaatgtgtgtgtatatattagcattttttgtttctccttgttcaaacttcgatggacccaacttgataagcaaatgttgc 40722535  T
Q  110 tattta---attgaaatttaaaagcaggcaggcagccacctgctcactcatattagagtggtgcaaaatggtgagtttgataattttgcttatatttgcg 206  Q
    ||||||   ||| |||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40722536 tatttagtaattaaaatttaaaagcaggcaggcagccacctgctca----tattagagtggtgcaaaatggtgagtttgataattttgcttagatttgcg 40722631  T
Q  207 gg-atttggacaaattaaatactcgatatgtacaaaatactaccctacatcattccaacgcttaaatgttgttgacatttgatttgataaaaaagactca 305  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40722632 gggatttggacaaattaaatactcgatatgtacaaaatactaccctacatcattccaactcttaaatgttgttgacatttgatttgataaaaaagactca 40722731  T
Q  306 cttatatgcttttgattgcactactgagaaccaaaatacgagttctcactactaggatcattttatacttttatttttggagaggtaggatgatattgta 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  40722732 cttatatgcttttgattgcactactgagaaccaaaatacgagttctcactactacgatcattttaaacttttatttttggagaggtaggatgatattgta 40722831  T
Q  406 tttaatttgcaccgaaaattgttgtaaatattttttgtaaagaagtgtgcacattacaaacaaactaaccgagaagccagtcctcattgttagaatcatc 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40722832 tttaatttgcaccgaaaattgttgtaaatattttttgtaaagaagtgtgcacattacaaacaaactaaccgagaagccagtcctcattgttagaatcatc 40722931  T
Q  506 cattactaattggtaagcatctttaaaataatgaaaatggtaaagagtgttattgggacacttgttagttgtcaagagaacataaataaaaatatcacgt 605  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| | ||||||||| ||||| |||||||||||    
T  40722932 catcactaattggtaagcatctttaaaataatgaaaatggtaaagagtgttattggaacacttcttagtttttaagagaacaaaaatagaaatatcacgt 40723031  T
Q  606 tgagaagtagtnnnnnnntggtgaattcaactttttaaaagttaaaaatttgttattttcaatacaaagttactgnnnnnnngtttccttaacgaataca 705  Q
    ||| |||||||       ||||||||| || |||||||||||||||||||||||||||||||||||||| |||||       ||||||||||| ||||||    
T  40723032 tgaaaagtagt-aaaaaatggtgaatttaattttttaaaagttaaaaatttgttattttcaatacaaagctactg-ttttttgtttccttaacaaataca 40723129  T
Q  706 ctgaggacacttattaaaaagaccttaaaataatactcatcggttggatatttctccaaatctatatattatacacttttaccacgtagaaatattagtt 805  Q
    | |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40723130 ccgaggacacttgttaaaaagactttaaaataatactcatcggttggatatttctccaaatctatatattatacacttttaccacgcagaaatattagtt 40723229  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 631 - 679
Target Start/End: Complemental strand, 8053226 - 8053178
Alignment:
Q  631 ttcaactttttaaaagttaaaaatttgttattttcaatacaaagttact 679  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  8053226 ttcaactttttaaaagttaaaaaattgttatttccaatacaaagttact 8053178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 624 - 669
Target Start/End: Original strand, 21195335 - 21195380
Alignment:
Q  624 tggtgaattcaactttttaaaagttaaaaatttgttattttcaata 669  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||    
T  21195335 tggtgaattcaactttttaaaagttaaaaaattgttatttccaata 21195380  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 627 - 673
Target Start/End: Original strand, 15502695 - 15502741
Alignment:
Q  627 tgaattcaactttttaaaagttaaaaatttgttattttcaatacaaa 673  Q
    ||||||||||||||||||||||||||| |||| |||| |||||||||    
T  15502695 tgaattcaactttttaaaagttaaaaaattgtaatttccaatacaaa 15502741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 627 - 673
Target Start/End: Complemental strand, 15005856 - 15005810
Alignment:
Q  627 tgaattcaactttttaaaagttaaaaatttgttattttcaatacaaa 673  Q
    ||||||||||||| ||||||||||||| |||| ||||||||| ||||    
T  15005856 tgaattcaactttgtaaaagttaaaaaattgtaattttcaatgcaaa 15005810  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 624 - 673
Target Start/End: Original strand, 11803421 - 11803470
Alignment:
Q  624 tggtgaattcaactttttaaaagttaaaaatttgttattttcaatacaaa 673  Q
    |||||||||||||||||||||||||||||  ||||||||| |||||||||    
T  11803421 tggtgaattcaactttttaaaagttaaaacattgttatttccaatacaaa 11803470  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 630 - 673
Target Start/End: Original strand, 38756128 - 38756171
Alignment:
Q  630 attcaactttttaaaagttaaaaatttgttattttcaatacaaa 673  Q
    ||||||||||||| ||||| |||| |||||||||||||||||||    
T  38756128 attcaactttttagaagtttaaaaattgttattttcaatacaaa 38756171  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 631 - 667
Target Start/End: Complemental strand, 40555635 - 40555599
Alignment:
Q  631 ttcaactttttaaaagttaaaaatttgttattttcaa 667  Q
    ||||||||||||||||| |||||||||||||||||||    
T  40555635 ttcaactttttaaaagtcaaaaatttgttattttcaa 40555599  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 627 - 673
Target Start/End: Complemental strand, 28782734 - 28782688
Alignment:
Q  627 tgaattcaactttttaaaagttaaaaatttgttattttcaatacaaa 673  Q
    |||||||||| |||||||||| ||||| |||| ||||||||||||||    
T  28782734 tgaattcaacattttaaaagtaaaaaagttgtaattttcaatacaaa 28782688  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 626 - 659
Target Start/End: Complemental strand, 28992984 - 28992951
Alignment:
Q  626 gtgaattcaactttttaaaagttaaaaatttgtt 659  Q
    |||||||||||||||||||||||||||| |||||    
T  28992984 gtgaattcaactttttaaaagttaaaaaattgtt 28992951  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 626 - 659
Target Start/End: Complemental strand, 28996264 - 28996231
Alignment:
Q  626 gtgaattcaactttttaaaagttaaaaatttgtt 659  Q
    |||||||||||||||||||||||||||| |||||    
T  28996264 gtgaattcaactttttaaaagttaaaaaattgtt 28996231  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 673
Target Start/End: Original strand, 32522755 - 32522804
Alignment:
Q  624 tggtgaattcaactttttaaaagttaaaaatttgttattttcaatacaaa 673  Q
    |||||||||||||||||||||| ||||||| || |||||| |||| ||||    
T  32522755 tggtgaattcaactttttaaaatttaaaaaattattatttccaatgcaaa 32522804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 679
Target Start/End: Original strand, 45257659 - 45257714
Alignment:
Q  624 tggtgaattcaactttttaaaagttaaaaatttgttattttcaatacaaagttact 679  Q
    ||||||||||||||||||||||| |||||| || |||||| |||| ||||| ||||    
T  45257659 tggtgaattcaactttttaaaagctaaaaaattattatttccaatgcaaagctact 45257714  T

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Target: scaffold2122 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold2122
Description:

Target: scaffold2122; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 626 - 659
Target Start/End: Original strand, 676 - 709
Alignment:
Q  626 gtgaattcaactttttaaaagttaaaaatttgtt 659  Q
    |||||||||||||||||||||||||||| |||||    
T  676 gtgaattcaactttttaaaagttaaaaaattgtt 709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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