View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5173-Insertion-6 (Length: 680)
Name: NF5173-Insertion-6
Description: NF5173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5173-Insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 8 - 410
Target Start/End: Complemental strand, 34340751 - 34340349
Alignment:
| Q |
8 |
tcaatttgatgaatatatgaaataaaatgtgtgattaagtgtctgtttagtagtatcaatgtattaccaaatgataggtgttgttaaaggttnnnnnnnc |
107 |
Q |
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| T |
34340751 |
tcaatttgatgaatatatgaaataaaatgtgtgattaagtgtctgttcagtagtatcaatgtattaccaaatgataggtgttgttaaaggttaaaaaaac |
34340652 |
T |
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| Q |
108 |
cattataatagtgttgcattcattacaacatgctgaatttcaagacaagaaaaagtaagatagagagaaattttcagcgttgtgatgatctatgtttaat |
207 |
Q |
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| T |
34340651 |
cattataatagtgttgcattcattacaacatgctgaatttcaagacaagaaaaagtaagatagagagaaattttcagcgttgtgatgatttatgtttaat |
34340552 |
T |
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| Q |
208 |
tgaatctgtaactatctggttgcaatatgtttctgtattgatcaagaaaataaaatccacctatgttgtaaccataatttcattcttagtattgttattg |
307 |
Q |
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| T |
34340551 |
tgaatctgtaactatctggttgcaatatgtttctgtattgatcaagaaaataaaatccacctatgttgtaaccataatttcattcttagtattgttattg |
34340452 |
T |
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| Q |
308 |
ataagcatttcattaattatgaaatgaaaaggcagcacttgatttcattgctaagctttaatttttggagagaagggtgaatatgcataatccaatcaga |
407 |
Q |
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| T |
34340451 |
ataagcatttcattaattatgaaatgaaaaggcagcacttgatttcattgctaagctttaatttttggagagaagggtgaatatgcataatccaatcaga |
34340352 |
T |
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| Q |
408 |
aga |
410 |
Q |
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| T |
34340351 |
aga |
34340349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 456 - 522
Target Start/End: Complemental strand, 34340354 - 34340288
Alignment:
| Q |
456 |
agaagaatattatccattaagaatctgtatcagtagttaaaaccatataaaatacaatcccaaatat |
522 |
Q |
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| T |
34340354 |
agaagaatattatccattaagaatctgtatcaatagttaaaaccatataaaatacaataccaaatat |
34340288 |
T |
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