View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5173_high_11 (Length: 234)
Name: NF5173_high_11
Description: NF5173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5173_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 18219681 - 18219888
Alignment:
| Q |
11 |
agaatatcacaaagcaatcattagcatcattattttattgtattctgatgaaggtaggtagcataatgattttgcaatgaaaacattcaatcaatgagca |
110 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
18219681 |
agaatattacaacgcaatcattagcatcattattttattgtattctgatgaaggtaggtagcataattattttgcaatgaaaacattcaatcaatgagca |
18219780 |
T |
|
| Q |
111 |
ctcaatagaataaagagtttatatatgttacctccatgccattcaatgccaaagaaatttcttttagctgttcttcaattttagcctttttatgaaccag |
210 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18219781 |
ctcaataaaataaagagtttatatatgttacctccatgccattcaatgccaaagaaatttcttttagctgttcttcaattttagcctttttatgaaccag |
18219880 |
T |
|
| Q |
211 |
ctccaaat |
218 |
Q |
| |
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|||||||| |
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|
| T |
18219881 |
ctccaaat |
18219888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 43011507 - 43011715
Alignment:
| Q |
11 |
agaatatcacaaagcaatcattagcatcattattttattgtattctgatgaaggtaggtagcataatgattttgcaatgaaaacattcaatcaatgagca |
110 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||| ||||||||||| |||| |
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| T |
43011507 |
agaatatttcaaagcaatcatcagcatcattattttattgtattctgatgaatgtaggtagcataattattttgcattgaaaaaattcaatcaataagca |
43011606 |
T |
|
| Q |
111 |
-ctcaatagaataaagagtttatatatgttacctccatgccattcaatgccaaagaaatttcttttagctgttcttcaattttagcctttttatgaacca |
209 |
Q |
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|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43011607 |
gctcaataaaataaagagtttatatatgttacctccatgccattcaatgccaaagaaatttcttttagctgttcttcaattttagcctttttatgaacca |
43011706 |
T |
|
| Q |
210 |
gctccaaat |
218 |
Q |
| |
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||||||||| |
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|
| T |
43011707 |
gctccaaat |
43011715 |
T |
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