View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5173_high_2 (Length: 386)
Name: NF5173_high_2
Description: NF5173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5173_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 7 - 375
Target Start/End: Original strand, 26276579 - 26276947
Alignment:
| Q |
7 |
ctacacatttgtgtccattgctcgtcagaagtgactaaagaccaacaaagctgcagcagggaggatgaattgaccaaccttgggtccttaacagatagac |
106 |
Q |
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| T |
26276579 |
ctacacatttgtgtccattgctcgtcagaagtgactaaagaccaacaaagctgcagcagggaggatgaattgaccagccttgggtccttcacagatagac |
26276678 |
T |
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| Q |
107 |
ttccttcctcatttggtttacataaatccctccaagccaccgtacaaatttttgcctgagtgatatcaccgctccaaataaaggtctttatcatcttggt |
206 |
Q |
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| T |
26276679 |
ctccttcctcatttggtttacataaatccctccaagccaccgtacaaatttttgcctgagtgatatcaccgctccaaataaaggtctttatcatcttggt |
26276778 |
T |
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| Q |
207 |
taactgcttcaaaagattagcaggccaaggataaacatgaaatgagtacagcaacatactatttatcacagaattgacaagttgtactctccccattata |
306 |
Q |
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| T |
26276779 |
taactgcttcaaaagattagcaggccaaggataaacatgaaatgagtacagcagcatactatttatcacagaattgacaagttgtactctccccattata |
26276878 |
T |
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| Q |
307 |
gataacagcaagcctttccaaacagccaatttgactttgattctgtccacaataggtcggaaatgatga |
375 |
Q |
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| T |
26276879 |
gataacagcaagcctttccaaacagccaatttgactttgattatgtccacaataggtcggaaatgatga |
26276947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 169 - 328
Target Start/End: Original strand, 39398737 - 39398897
Alignment:
| Q |
169 |
atatcaccgctccaaataaaggtctttatcatcttggttaact-gcttcaaaagattagcaggccaaggataaacatgaaatgagtacagcaacatacta |
267 |
Q |
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| T |
39398737 |
atatccccgctctaaataaaattctttatcatcttggttaggttgctgcagaagattggtaggccaaagataaacatgaaacgagtaaagtaacatacta |
39398836 |
T |
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| Q |
268 |
tttatcacagaattgacaagttgtactctccccattatagataacagcaagcctttccaaa |
328 |
Q |
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| T |
39398837 |
ctaatcaccgaattgaccagctgaactcgtcccattatagataacaataagcctttccaaa |
39398897 |
T |
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