View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5173_high_7 (Length: 242)
Name: NF5173_high_7
Description: NF5173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5173_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 40466081 - 40466239
Alignment:
| Q |
1 |
tcatgatgataaaataaggaaaatgnnnnnnnnnttcaaaagtagtaataattaccaattcttttccaagttcaatagcagcatccttatagctagtttt |
100 |
Q |
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| T |
40466081 |
tcatgatgataaaataaggaaaatgaaaaaaaa-ttcaaaagtagtaataattaccaattcttttccaagttcaatagcagcatccttatagctagtttt |
40466179 |
T |
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| Q |
101 |
gttaccagggctactaccacaaaacacacaaattctcttaaactttgataccttcatttc |
160 |
Q |
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| T |
40466180 |
gttaccagggctactaccacaaaacacacaaattctcttaaactttgataccttcatttc |
40466239 |
T |
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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 149
Target Start/End: Complemental strand, 21624111 - 21624013
Alignment:
| Q |
51 |
attaccaattcttttccaagttcaatagcagcatccttatagctagttttgttaccagggctactaccacaaaacacacaaattctcttaaactttgat |
149 |
Q |
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| T |
21624111 |
attaccaactcatttccaagctcaatagcagcatctttatagctactcttgttaccaggactactaccacaaaaaacacaaatcctcttaaactttgat |
21624013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 148
Target Start/End: Original strand, 28271927 - 28272022
Alignment:
| Q |
53 |
taccaattcttttccaagttcaatagcagcatccttatagctagttttgttaccagggctactaccacaaaacacacaaattctcttaaactttga |
148 |
Q |
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| T |
28271927 |
taccaattcatttccaagttcaatggcagcatcttgataactacttttcttgccaggactacttccacaaaagacacaaaccctcttgaactttga |
28272022 |
T |
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