View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5173_low_1 (Length: 643)
Name: NF5173_low_1
Description: NF5173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5173_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 538; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 18 - 626
Target Start/End: Original strand, 38400357 - 38400974
Alignment:
| Q |
18 |
tgaacagcaataatattggctgaaataattgtggttagtatgtcacagaccaaagccgaggacaaagacaatctaccaagctctgagttttggatttgaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38400357 |
tgaacagcaataatattggctgaaataattgtggttagtatgtcacagaccaaagccgaggacaaagacaatctaccaagctctgagttttggatttgaa |
38400456 |
T |
|
| Q |
118 |
gttcacttagaagtgaagcgattgttgaaaattgacttagactgtgagataacgttgccactatgattccacccccgccatgtactttttgaatggcttc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
38400457 |
gttcacttagaagtgaagcgattgttgaaaattgacttagactgtgagataacgttgccactatgattccaccgccgccgtgtactttttgaatggcttc |
38400556 |
T |
|
| Q |
218 |
gattcttccaggcaatgttagaagtggtaaaaacaaagcacataatggtacacataatccaattattgaaattatccatgctttctttcctgtcctcgtt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38400557 |
gattcttccaggcaatgttagaagtggtaaaaacaaaacacataatggtacacataatccaattattgaaattatccatgctttctttcctgtcctcgtt |
38400656 |
T |
|
| Q |
318 |
atcaagctgaaatccatttgtacaccgtttatgaaaacgaagatcaccatacctaa---------tgatgaaattacgtcatgagttccatatggaaaca |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38400657 |
atcaagctgaaatccatttgtacaccgtttatgaaaacgaagatcaccatacctaatgatgaaattgatgaaattacgtcatgagttccatatggaaaca |
38400756 |
T |
|
| Q |
409 |
acttgcccatgtatgcttccaatgattttagctcaaatgaaacacccagaatcaacccaacctgcaaatggaatgagtatttactttaataatggaaatt |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38400757 |
acttgcccatgtatgcttccaatgattttagctcaaatgaaacacctagaatcaacccaacctgcaaatggaatgagtattgtgtttaataatggaaatt |
38400856 |
T |
|
| Q |
509 |
tagcaaaattactatttgtatacaatttaacttcttcatttgtgtgaagaagttacatatgtaagaaatgaaattagaaacaaaatctattctttgtatg |
608 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38400857 |
taccaaaattactatttgtatgcaatttaacttcatcatttgtgtgaagaagttacagatgtaagaaatgaaattagaaacaaaatctattcttcgtatg |
38400956 |
T |
|
| Q |
609 |
caatttaactttttctaa |
626 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
38400957 |
caatttaactttttctaa |
38400974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 23 - 489
Target Start/End: Original strand, 38391773 - 38392248
Alignment:
| Q |
23 |
agcaataatattggctgaaataattgtggttagtatgtcacagaccaaagccgaggacaaagacaatctaccaagctctgagttttggatttgaagttca |
122 |
Q |
| |
|
||||| || ||||| |||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38391773 |
agcaacaaaattggttgaaataactgttgttagtatgtcacagaccaaagccgaggacaaagttaatctaccaagctctgagttttggatttgaagttca |
38391872 |
T |
|
| Q |
123 |
cttagaagtgaagcgattgttgaaaattgacttagactgtgagataacgttgccactatgattccacccccgccatgtactttttgaatggcttcgattc |
222 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| |||| |||| |||||||||| |||||||||||||| | | |
|
|
| T |
38391873 |
cttaggagtgaagagattgttgaaaattgacttagactgtgagataacattgccaccatgactccattgccgccatgtaatttttgaatggcttgaacta |
38391972 |
T |
|
| Q |
223 |
ttccaggcaatgttagaagtggta-aaaacaaagcacataatggtacacataatccaattattgaaattatccatgctttctttcctgtcctcgttatca |
321 |
Q |
| |
|
| |||||||||||||| ||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
38391973 |
tcccaggcaatgttagtagtggtataaaaccaa-cacataatggtacagataatccaattattgaaattatccatgctctctttcctgtccttgttatca |
38392071 |
T |
|
| Q |
322 |
agctgaaatccatttgtacaccgtttatgaaaacgaagatcaccatacctaatga---------tgaaattacgtcatgagttccatatggaaacaactt |
412 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||| |
|
|
| T |
38392072 |
agctgaaatccatttgtacactgttaatgaaaacgaagatcaccatacctaatgatgaaattgttgaaattacgtcatgagttccatatggaaatatctt |
38392171 |
T |
|
| Q |
413 |
gcccatgtatgcttccaatgattttagctcaaatgaaacacccagaatcaacccaacctgcaaatggaatgagtatt |
489 |
Q |
| |
|
||||||||||| || |||| ||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
38392172 |
gcccatgtatgtgtctaatggttttagctcaaatgagacacctagaatcaacccagcctgcaaatggaatgagtatt |
38392248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 41 - 489
Target Start/End: Original strand, 38382933 - 38383390
Alignment:
| Q |
41 |
aataattgtggttagtatgtcacagaccaaagccgaggacaaagacaatctaccaagctctgagttttggatttgaagttcacttagaagtgaagcgatt |
140 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38382933 |
aataatcgcggttagtatgtcacagaccaaagccgaggacaaagacaatctaccaagctctgagttttggatttgaagttcacttaggagtgaagcgatt |
38383032 |
T |
|
| Q |
141 |
gttgaaaattgacttagactgtgagataacgttgccactatgattccacccccgccatgtactttttgaatggcttcgattcttccaggcaatgttagaa |
240 |
Q |
| |
|
||| |||| |||||||||||||| |||| ||||||| | ||||||| ||||||| || ||||||||||||||| | | |||||||||||||||| | |
|
|
| T |
38383033 |
gttccaaatgtacttagactgtgagttaacattgccaccaagattccattgccgccatctattttttgaatggcttcaacttttccaggcaatgttagta |
38383132 |
T |
|
| Q |
241 |
gtggtaaaaacaaagcacataatggtacacataatccaattattgaaattatccatgctttctttcctgtcctcgttatcaagctgaaatccatttgtac |
340 |
Q |
| |
|
||||| ||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38383133 |
atggtataaacaaaacacataatggtacagaaaatccaattattgaaattatccatgctttctttcctgtccttgttatcaagctgaaatccatttgtac |
38383232 |
T |
|
| Q |
341 |
accgtttatgaaaacgaagatcaccatacctaa---------tgatgaaattacgtcatgagttccatatggaaacaacttgcccatgtatgcttccaat |
431 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||| |||| | |
|
|
| T |
38383233 |
accgtttatgaaaacgaagaacatcatacctaatgatgaaattgatgaaattacgtcatgagttccatatggaaataacttgtccatgtatgtgtccatt |
38383332 |
T |
|
| Q |
432 |
gattttagctcaaatgaaacacccagaatcaacccaacctgcaaatggaatgagtatt |
489 |
Q |
| |
|
| |||||||||||| || ||||| |||||||||||| ||| |||||| |||||||||| |
|
|
| T |
38383333 |
ggttttagctcaaacgagacacctagaatcaacccagcctacaaatgaaatgagtatt |
38383390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 535 - 629
Target Start/End: Original strand, 38383449 - 38383543
Alignment:
| Q |
535 |
ttaacttcttcatttgtgtgaagaagttacatatgtaagaaatgaaattagaaacaaaatctattctttgtatgcaatttaactttttctaataa |
629 |
Q |
| |
|
|||||||||| |||| |||||||||||||| |||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||| |
|
|
| T |
38383449 |
ttaacttcttgatttatgtgaagaagttacctatggaagaaatgaaattagaaacaaaatatattctttgaatgcaatttaactttttcttataa |
38383543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 561 - 629
Target Start/End: Original strand, 38392333 - 38392401
Alignment:
| Q |
561 |
ttacatatgtaagaaatgaaattagaaacaaaatctattctttgtatgcaatttaactttttctaataa |
629 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
38392333 |
ttacagatggaagaaatgaaattagaaacaaaatctattttttatatgcaatttaactttttctaataa |
38392401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 230; Significance: 1e-126; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 23 - 484
Target Start/End: Complemental strand, 37839719 - 37839252
Alignment:
| Q |
23 |
agcaataatattggctgaaataattgtggttagtatgtcacagaccaaagccgaggacaaagacaatctaccaagctctgagttttggatttgaagttca |
122 |
Q |
| |
|
||||| |||||||| |||||||| |||| | |||||||| ||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
37839719 |
agcaacaatattggttgaaataactgtgaccaatatgtcactgaccaaagccgaggataaagacaatctaccaagctcagagttttgaatttgaagttca |
37839620 |
T |
|
| Q |
123 |
cttagaagtgaagcgattgttgaaaattgacttagactgtgagataacgttgccactatgattccacccccgccatgtactttttgaatggcttcgattc |
222 |
Q |
| |
|
||||| |||||||| ||||||| |||||||||||||||||| | |||| || |||| ||||||| | || ||| | ||| ||||| |||||||||| |
|
|
| T |
37839619 |
cttagtagtgaagcaattgttgcaaattgacttagactgtgtgttaacactgtcactgcgattccatcacc---atgcattttatgaattgcttcgattc |
37839523 |
T |
|
| Q |
223 |
ttccaggcaatgttagaagtggta-aaaacaaagcacataatggtacacataatccaattattgaaattatccatgctttctttcctgtcctcgttatca |
321 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
37839522 |
ttccaggcaatgttagtagtggtataaaaccaa-cacataatggtacaaataatccaattattgaaattatccatgctctctttcctgtccttgttatca |
37839424 |
T |
|
| Q |
322 |
agctgaaatccatttgtacaccgtttatgaaaacgaagatcaccatacctaatgatga---------aattacgtcatgagttccatatggaaacaactt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
37839423 |
agctgaaatccatttgtacaccgtttatgaaaacaaagagcaccattcctaatgatgaaattgttgaaattacgtcatgagttccatatggaaaaaactt |
37839324 |
T |
|
| Q |
413 |
gcccatgtatgcttccaatgattttagctcaaatgaaacacccagaatcaacccaacctgcaaatggaatga |
484 |
Q |
| |
|
| |||||||| ||||||| ||||||||||||||| | ||| |||||||||||| |||||||||||||||| |
|
|
| T |
37839323 |
gttcatgtatgtgtccaatggttttagctcaaatgagatacctagaatcaacccagcctgcaaatggaatga |
37839252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 271 - 432
Target Start/End: Complemental strand, 37845076 - 37844915
Alignment:
| Q |
271 |
ataatccaattattgaaattatccatgctttctttcctgtcctcgttatcaagctgaaatccatttgtacaccgtttatgaaaacgaagatcaccatacc |
370 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||| ||||||||||| || | |||||||| |
|
|
| T |
37845076 |
ataatccaattattgaaattatccatgctctctttcccgtccttattatcaagctgaaatccatttgtacaccatttatgaaaacaaaaagaaccatacc |
37844977 |
T |
|
| Q |
371 |
taatgatgaaattacgtcatgagttccatatggaaacaacttgcccatgtatgcttccaatg |
432 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37844976 |
tattgatgaaattacttcatgagttccatatggaaacaacttgcccatgtatgcgtccaatg |
37844915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 43 - 165
Target Start/End: Complemental strand, 37845289 - 37845167
Alignment:
| Q |
43 |
taattgtggttagtatgtcacagaccaaagccgaggacaaagacaatctaccaagctctgagttttggatttgaagttcacttagaagtgaagcgattgt |
142 |
Q |
| |
|
|||||||||| ||||| || | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
37845289 |
taattgtggtcagtatatcgctgaccaaagccgatgacaaagacaatctaccaagctctgagttttggatttgaagttcacttaggagtgaagcaattgt |
37845190 |
T |
|
| Q |
143 |
tgaaaattgacttagactgtgag |
165 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
37845189 |
tgcaaattgacttagactgtgag |
37845167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 571 - 622
Target Start/End: Complemental strand, 37838920 - 37838869
Alignment:
| Q |
571 |
aagaaatgaaattagaaacaaaatctattctttgtatgcaatttaacttttt |
622 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37838920 |
aagaaatgaaattagaaacaaaatctattttttgtatgcaatttaacttttt |
37838869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 561 - 629
Target Start/End: Complemental strand, 37844496 - 37844428
Alignment:
| Q |
561 |
ttacatatgtaagaaatgaaattagaaacaaaatctattctttgtatgcaatttaactttttctaataa |
629 |
Q |
| |
|
||||| ||| ||||||||| ||||||||||||||||||| | | |||||||||||||||| |||||||| |
|
|
| T |
37844496 |
ttacacatggaagaaatgatattagaaacaaaatctattttctatatgcaatttaactttatctaataa |
37844428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 37831479 - 37831425
Alignment:
| Q |
259 |
ataatggtacacataatccaattattgaaattatccatgctttctttcctgtcct |
313 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||| ||||| || |||||| |||||| |
|
|
| T |
37831479 |
ataatggtacacctaatctaattattgaaattttccatactctctttcatgtcct |
37831425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University