View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5173_low_11 (Length: 236)
Name: NF5173_low_11
Description: NF5173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5173_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37157799 - 37158020
Alignment:
| Q |
1 |
agtatgaaaacaatagcagagaaatgagcttcgaccacactaaacttttgttatgctttcccaatgaaggtggagcagaagaaccaacagagctgtaaca |
100 |
Q |
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| T |
37157799 |
agtatgaaaacaatagcagagaaatgagcttcaaccacactaaacttttgttatgctttcccaatgaaggtggagcagaagaaccaacagagctgtaaca |
37157898 |
T |
|
| Q |
101 |
taaaacaataaattgctgttattattaaattaatgcaatggtaaaataaaatatttgtaagcttctttctattttggcaaattagtaatgttatgatatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37157899 |
taaaacaataaattgctgttattattaaattaatgcaatggtaaaataaaatatttgtaagcttctttctattttggcaaattagtaatgttatgatatg |
37157998 |
T |
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| Q |
201 |
acacatacccaggtgaagaata |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
37157999 |
acacatacccaggtgaagaata |
37158020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 7828777 - 7828937
Alignment:
| Q |
1 |
agtatgaaaacaatagcagagaaatgagcttcgaccacactaaacttttgttatgctttcccaatgaaggtggagcagaagaaccaacagagctgtaaca |
100 |
Q |
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|||||||||||||||||| |||| | || ||| ||||| ||||||||||||||| |||| |||||||||||||||||||| |||||||| |||||||||| |
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| T |
7828777 |
agtatgaaaacaatagcaaagaagtaagtttcaaccacgctaaacttttgttattcttttccaatgaaggtggagcagaacaaccaacaaagctgtaaca |
7828876 |
T |
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| Q |
101 |
taaaacaataaattgctgttattattaaattaatgcaatggtaaaataaaatatttgtaagcttct |
166 |
Q |
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||||||||||||||||||| |||||||| || |||||||||||||| ||||||||||||||| |
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| T |
7828877 |
taaaacaataaattgctgtaattattaa-----tgtaatggtaaaataaagtatttgtaagcttct |
7828937 |
T |
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