View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5173_low_4 (Length: 301)
Name: NF5173_low_4
Description: NF5173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5173_low_4 |
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| [»] chr2 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 38009986 - 38010274
Alignment:
| Q |
13 |
attctgtacattgacaaaggttggacaactctggagagctgggcagaacaaagggaagtttttaaaaatggcaacttagtttgttttgtatagtaaacta |
112 |
Q |
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| T |
38009986 |
attctctacattgccaaaggttggacgactctggaaagctgggcagaacaaaggtaagttttttaaaatggcaacttagtttgttttgtatagtaaacta |
38010085 |
T |
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| Q |
113 |
cttgaatcataagttgaatttcagcatgtttgtgaagattatgcatctcgtattgtattttttaagtcatgctttaggttaaaatggtatttgtgcctat |
212 |
Q |
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| T |
38010086 |
cttgaatcataagttgaatttcagcatggttgtgaagattatgcatctcatgttgtattttttaagtcatgctttaggttaaaatggtatttgtgcctat |
38010185 |
T |
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| Q |
213 |
caaaagcttgaaaaggtcatccatcaatggctggaatttgcctcacatgtccagtacttgggtttataactggtcctaagatcagacat |
301 |
Q |
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| T |
38010186 |
caaaagcttgaaagggtcatccatcaatggctggaatttgcctcacatgtccagtatttgggtttataactggtcctaagatcagacat |
38010274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 40 - 301
Target Start/End: Complemental strand, 20003741 - 20003492
Alignment:
| Q |
40 |
actctggagagctgggcagaacaaagggaagtttttaaaaatggcaacttagtttgttttgtatagtaaactacttgaatcataagttgaatttcagcat |
139 |
Q |
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| T |
20003741 |
actctggataggtgggcacgacaaagataagtttttaaaaattgttacttagttt----tgtatggtaaacttcttgaatcata-gttgaaattcagcat |
20003647 |
T |
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| Q |
140 |
gtttgtg---aagattatgcatctcgtattgtattttttaagtcatgctttaggttaaaatggtatttgtgcctatcaaaagcttgaaaaggtcatcca- |
235 |
Q |
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| T |
20003646 |
gtttgtgcataagattatgtatct--------atttt---agtcatgctttagattaaaatggtatttgtgcctatcaaaatcttgaaagagtcatccat |
20003558 |
T |
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| Q |
236 |
tcaatggctggaatttgcctcacatgtccagtacttgggtttataactggtcctaagatcagacat |
301 |
Q |
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| T |
20003557 |
ttaatggatgaaatttgcctcacatgttcaatatttgggtttttaactggtgctaagatcagacat |
20003492 |
T |
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