View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5173_low_6 (Length: 251)
Name: NF5173_low_6
Description: NF5173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5173_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 30059550 - 30059326
Alignment:
| Q |
13 |
catcaaaactcaacactaaaacttccacaaacaaaacatagaaacaagacaacacagataacttgaaccaaacacctattgaaacatcactcgtttctct |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30059550 |
catcaaaactcaacactaaaacttccacaaacaaaacatagaaacaagacaacacagataacttgaaccaaacacctattgaaacatcactcgtttctct |
30059451 |
T |
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| Q |
113 |
atcaataacactgcaaattggactatcatttgaggtagtactgtccttaacgattccaattctcttgtacacaagaatctttctaacagagacaacaaag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30059450 |
atcaataacactgcaaattggactatcatttgaggtagtactgtccttaacgattccaattctcttgtacacaagaatctttctaacagagacaacaaag |
30059351 |
T |
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| Q |
213 |
agaaacaacagaacaagagtcaagt |
237 |
Q |
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||||||||||||||||||||||||| |
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| T |
30059350 |
agaaacaacagaacaagagtcaagt |
30059326 |
T |
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