View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5173_low_9 (Length: 239)

Name: NF5173_low_9
Description: NF5173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5173_low_9
NF5173_low_9
[»] chr2 (10 HSPs)
chr2 (1-225)||(38010412-38010638)
chr2 (179-216)||(755633-755670)
chr2 (172-221)||(38216141-38216190)
chr2 (169-221)||(5903660-5903712)
chr2 (169-221)||(5903737-5903789)
chr2 (169-225)||(7480811-7480867)
chr2 (169-221)||(36501427-36501479)
chr2 (169-216)||(33321224-33321271)
chr2 (179-221)||(4533444-4533486)
chr2 (169-221)||(8832579-8832631)
[»] chr3 (11 HSPs)
chr3 (1-158)||(20003208-20003366)
chr3 (184-225)||(3876190-3876231)
chr3 (172-221)||(30321645-30321694)
chr3 (184-221)||(37243588-37243625)
chr3 (184-221)||(40240504-40240541)
chr3 (184-224)||(3645421-3645461)
chr3 (184-224)||(4257225-4257265)
chr3 (184-224)||(29614312-29614352)
chr3 (185-225)||(32901076-32901116)
chr3 (169-221)||(46573366-46573418)
chr3 (169-221)||(48597778-48597830)
[»] chr8 (9 HSPs)
chr8 (169-221)||(10213817-10213869)
chr8 (169-215)||(10298839-10298885)
chr8 (184-225)||(24866878-24866919)
chr8 (184-225)||(28280827-28280868)
chr8 (184-221)||(32975809-32975846)
chr8 (169-221)||(28879177-28879229)
chr8 (169-221)||(32212927-32212979)
chr8 (184-224)||(37410840-37410880)
chr8 (184-224)||(41145323-41145363)
[»] chr5 (18 HSPs)
chr5 (169-221)||(40452389-40452441)
chr5 (171-225)||(589271-589325)
chr5 (169-229)||(22573753-22573813)
chr5 (169-221)||(40697128-40697180)
chr5 (173-221)||(42558633-42558681)
chr5 (169-216)||(1868968-1869015)
chr5 (170-221)||(1943117-1943168)
chr5 (169-216)||(31637003-31637050)
chr5 (169-215)||(10537138-10537184)
chr5 (169-231)||(13739341-13739403)
chr5 (179-225)||(14243943-14243989)
chr5 (179-216)||(2577350-2577387)
chr5 (184-225)||(29659178-29659219)
chr5 (172-221)||(29922104-29922153)
chr5 (169-216)||(1576757-1576805)
chr5 (169-216)||(1608010-1608058)
chr5 (169-221)||(35083361-35083413)
chr5 (169-221)||(35536966-35537018)
[»] chr4 (15 HSPs)
chr4 (169-225)||(17222947-17223003)
chr4 (169-221)||(42153074-42153126)
chr4 (169-221)||(48591336-48591388)
chr4 (169-225)||(12495556-12495612)
chr4 (169-221)||(23297407-23297459)
chr4 (177-221)||(23297557-23297601)
chr4 (169-221)||(36741026-36741078)
chr4 (169-216)||(3564333-3564380)
chr4 (170-225)||(30956802-30956857)
chr4 (184-221)||(18630822-18630859)
chr4 (184-225)||(42617157-42617198)
chr4 (169-225)||(4331448-4331504)
chr4 (184-216)||(11298709-11298741)
chr4 (169-221)||(28074486-28074538)
chr4 (169-221)||(48667792-48667844)
[»] chr1 (12 HSPs)
chr1 (169-221)||(47413494-47413546)
chr1 (169-216)||(37712194-37712241)
chr1 (169-221)||(41196622-41196674)
chr1 (169-217)||(45267588-45267636)
chr1 (169-221)||(48819421-48819473)
chr1 (169-223)||(42367070-42367124)
chr1 (184-225)||(15235088-15235129)
chr1 (184-221)||(28690126-28690163)
chr1 (169-221)||(1321511-1321563)
chr1 (169-221)||(1565287-1565338)
chr1 (185-221)||(9572712-9572748)
chr1 (185-225)||(42591500-42591540)
[»] chr7 (12 HSPs)
chr7 (179-225)||(20888692-20888738)
chr7 (169-225)||(25908412-25908468)
chr7 (169-216)||(38372685-38372732)
chr7 (169-216)||(40629345-40629392)
chr7 (169-211)||(47511177-47511219)
chr7 (184-225)||(22032880-22032921)
chr7 (169-221)||(29378767-29378819)
chr7 (169-221)||(29390463-29390515)
chr7 (169-221)||(33204956-33205008)
chr7 (173-221)||(34923055-34923103)
chr7 (185-225)||(43818806-43818846)
chr7 (185-221)||(44613401-44613437)
[»] scaffold0157 (1 HSPs)
scaffold0157 (169-225)||(24865-24921)
[»] chr6 (10 HSPs)
chr6 (169-221)||(35071340-35071392)
chr6 (169-228)||(21891396-21891455)
chr6 (184-225)||(4808689-4808730)
chr6 (188-225)||(6776926-6776963)
chr6 (184-225)||(29052450-29052491)
chr6 (184-225)||(32165188-32165229)
chr6 (185-221)||(6752934-6752970)
chr6 (169-221)||(21025131-21025183)
chr6 (185-221)||(23239369-23239405)
chr6 (185-225)||(34223452-34223492)


Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 38010412 - 38010638
Alignment:
Q  1 ctataagttgtttggtaagttatcttaaagaacttgtcgaaataagttgaaagaagcttataaaaaatttcataaattgtctcataaaaca-atgccatt 99  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||  ||||||||    
T  38010412 ctataagttgtttggtaagttatcttgaagaacttgtcgaaataagctgaaagaagcttataaaaaatgtcataaattgtctcataaaacttatgccatt 38010511  T
Q  100 acacaa-ctcaaataattgcagtgaatgatgaaaatttaagatgaaaaagtgaagaaaaagagtgtctccttggattggtttatctttgagcttacgaaa 198  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||    
T  38010512 acacaaactcaaataattgcagtgaatgatgaaaatttaagatgaaaaagtgaagaaaaagagtgtctccttggattgtcttatctttgagcttatgaaa 38010611  T
Q  199 aatagcttatgcaaataagtaagtttt 225  Q
    |||||||||| ||||||| ||||||||    
T  38010612 aatagcttatacaaataaataagtttt 38010638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 755633 - 755670
Alignment:
Q  179 ttatctttgagcttacgaaaaatagcttatgcaaataa 216  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  755633 ttatctttgagcttatgaaaaatagcttatgcaaataa 755670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 38216190 - 38216141
Alignment:
Q  172 gattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    |||||| |||| ||| ||||||||||||||||||||||||||||| ||||    
T  38216190 gattggcttattttttagcttacgaaaaatagcttatgcaaataaataag 38216141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 5903712 - 5903660
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||| |||| |||||||| | |||||||||||||||||||||| ||||    
T  5903712 ttggattggcttatttttgagctcatgaaaaatagcttatgcaaataaataag 5903660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 5903789 - 5903737
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||| |||| |||||||| | |||||||||||||||||||||| ||||    
T  5903789 ttggattggcttatttttgagctcatgaaaaatagcttatgcaaataaataag 5903737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 7480811 - 7480867
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaagtttt 225  Q
    ||||||| |||||||||| ||||||  |||||||| |||||||||||| ||||||||    
T  7480811 ttggattagtttatcttttagcttataaaaaatagattatgcaaataaataagtttt 7480867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 36501427 - 36501479
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||| |||| |||||||||  |||||||||||||||||||||| ||||    
T  36501427 ttggattggcttatttttgagcttgtgaaaaatagcttatgcaaataaataag 36501479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 33321224 - 33321271
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataa 216  Q
    ||||||||| |||| |||||||||| | ||||||||||||||||||||    
T  33321224 ttggattggcttatttttgagcttatgtaaaatagcttatgcaaataa 33321271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 4533486 - 4533444
Alignment:
Q  179 ttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    |||| |||||||||| |||||||||||||||||||||| ||||    
T  4533486 ttatttttgagcttatgaaaaatagcttatgcaaataaataag 4533444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 8832631 - 8832579
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||  |||| ||| |||||| |||||||||||||||||||||| ||||    
T  8832631 ttggattgacttattttttagcttatgaaaaatagcttatgcaaataaataag 8832579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 20003366 - 20003208
Alignment:
Q  1 ctataagttgtttggtaagttatcttaaagaacttgtcgaaataagttgaaagaagcttataaaaaatttcataaattgtctcataaaac-aatgccatt 99  Q
    ||||| ||||||||||||| |||| | | ||| |||| |||||||| | ||  || |||||||||||| |||||||||||||||||||||  || |||||    
T  20003366 ctatatgttgtttggtaagctatcatgaggaatttgtagaaataagctaaagaaaacttataaaaaatgtcataaattgtctcataaaacttataccatt 20003267  T
Q  100 acacaa-ctcaaataattgcagtgaatgatgaaaatttaagatgaaaaagtgaagaaaaa 158  Q
    | |||| ||||||||||| | |||| |||||||||||||||||||||||||||| |||||    
T  20003266 atacaatctcaaataattac-gtgagtgatgaaaatttaagatgaaaaagtgaaaaaaaa 20003208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 3876190 - 3876231
Alignment:
Q  184 tttgagcttacgaaaaatagcttatgcaaataagtaagtttt 225  Q
    |||||||||| |||||||||||||||||||||| ||||||||    
T  3876190 tttgagcttatgaaaaatagcttatgcaaataaataagtttt 3876231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 30321645 - 30321694
Alignment:
Q  172 gattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    |||||| |||| ||| |||||| |||||||||||||||||||||| ||||    
T  30321645 gattggcttattttttagcttaagaaaaatagcttatgcaaataaataag 30321694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 37243625 - 37243588
Alignment:
Q  184 tttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  37243625 tttgagcttatgaaaaagagcttatgcaaataagtaag 37243588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 40240504 - 40240541
Alignment:
Q  184 tttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  40240504 tttgagcttatgaaaaatagcttatgcaaataaataag 40240541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 3645461 - 3645421
Alignment:
Q  184 tttgagcttacgaaaaatagcttatgcaaataagtaagttt 224  Q
    |||||||||| ||||||||||||||| |||||| |||||||    
T  3645461 tttgagcttatgaaaaatagcttatgtaaataaataagttt 3645421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 4257225 - 4257265
Alignment:
Q  184 tttgagcttacgaaaaatagcttatgcaaataagtaagttt 224  Q
    |||||||||| ||||||||||||||| |||||| |||||||    
T  4257225 tttgagcttatgaaaaatagcttatgtaaataaataagttt 4257265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 29614352 - 29614312
Alignment:
Q  184 tttgagcttacgaaaaatagcttatgcaaataagtaagttt 224  Q
    |||||||||| ||||||||||||||| |||||| |||||||    
T  29614352 tttgagcttatgaaaaatagcttatgtaaataaataagttt 29614312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 32901076 - 32901116
Alignment:
Q  185 ttgagcttacgaaaaatagcttatgcaaataagtaagtttt 225  Q
    ||||||||| |||||||||||||||||||||| || |||||    
T  32901076 ttgagcttatgaaaaatagcttatgcaaataaatatgtttt 32901116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 46573366 - 46573418
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||| | |||| ||| |||||| |||||||||||||||||||||| ||||    
T  46573366 ttggattcgcttattttttagcttaggaaaaatagcttatgcaaataaataag 46573418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 48597778 - 48597830
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||| |||| ||||||||||||||||||||  | ||||||||| ||||    
T  48597778 ttggattggcttatttttgagcttacgaaaaatagtgtttgcaaataaataag 48597830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 10213869 - 10213817
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||| |||| |||||||||| |||||||||||||||||||||| ||||    
T  10213869 ttggattggattatttttgagcttatgaaaaatagcttatgcaaataaataag 10213817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 10298839 - 10298885
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaata 215  Q
    ||||||||| |||| |||||||||| ||| |||||||||||||||||    
T  10298839 ttggattggcttatttttgagcttatgaataatagcttatgcaaata 10298885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 24866878 - 24866919
Alignment:
Q  184 tttgagcttacgaaaaatagcttatgcaaataagtaagtttt 225  Q
    |||||||||| |||||| ||||||||||||||| ||||||||    
T  24866878 tttgagcttatgaaaaagagcttatgcaaataaataagtttt 24866919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 28280868 - 28280827
Alignment:
Q  184 tttgagcttacgaaaaatagcttatgcaaataagtaagtttt 225  Q
    |||||||||| |||||| ||||||||||||||| ||||||||    
T  28280868 tttgagcttatgaaaaagagcttatgcaaataaataagtttt 28280827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 32975846 - 32975809
Alignment:
Q  184 tttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  32975846 tttgagcttatgaaaaatagcttatgcaaataaataag 32975809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 28879229 - 28879177
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||  |||| ||| |||||| |||||||||||||||||||||| ||||    
T  28879229 ttggattgacttattttttagcttatgaaaaatagcttatgcaaataaataag 28879177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 32212927 - 32212979
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||| |||| |||  ||||| |||||||||||||||||||||| ||||    
T  32212927 ttggattggcttatttttttgcttatgaaaaatagcttatgcaaataaataag 32212979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 37410840 - 37410880
Alignment:
Q  184 tttgagcttacgaaaaatagcttatgcaaataagtaagttt 224  Q
    |||||||||| ||||||||||||||| |||||| |||||||    
T  37410840 tttgagcttatgaaaaatagcttatgtaaataaataagttt 37410880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 41145323 - 41145363
Alignment:
Q  184 tttgagcttacgaaaaatagcttatgcaaataagtaagttt 224  Q
    |||||||||| ||||||||| |||||||||||| |||||||    
T  41145323 tttgagcttatgaaaaatagtttatgcaaataaataagttt 41145363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 40452389 - 40452441
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||| |||| |||||||||| |||||||||||||||||||||| ||||    
T  40452389 ttggattggcttatttttgagcttatgaaaaatagcttatgcaaataaataag 40452441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 589325 - 589271
Alignment:
Q  171 ggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaagtttt 225  Q
    |||||| ||||| ||||||||||  ||||||||||||||||||||| ||||||||    
T  589325 ggattgatttatttttgagcttataaaaaatagcttatgcaaataaataagtttt 589271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 22573813 - 22573753
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaagttttgatg 229  Q
    ||||||||| |||| |||||||||| |||||||||  ||||||||||| |||| |||||||    
T  22573813 ttggattggcttatttttgagcttatgaaaaatagggtatgcaaataaataagatttgatg 22573753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 40697180 - 40697128
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||| |||| |||||||||| |||||||||||||| ||||||| ||||    
T  40697180 ttggattggcttatttttgagcttatgaaaaatagcttatacaaataaataag 40697128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 42558633 - 42558681
Alignment:
Q  173 attggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||| |||| |||||||||| |||||||||||||||||||||| ||||    
T  42558633 attggcttatttttgagcttatgaaaaatagcttatgcaaataaataag 42558681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 1869015 - 1868968
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataa 216  Q
    ||||||||| |||| || ||||||| ||||||||||||||||||||||    
T  1869015 ttggattggcttattttcgagcttatgaaaaatagcttatgcaaataa 1868968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 1943168 - 1943117
Alignment:
Q  170 tggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    |||||| | |||| |||||||||||||||||| |||||||||||||| ||||    
T  1943168 tggatttgcttatttttgagcttacgaaaaatggcttatgcaaataaataag 1943117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 31637003 - 31637050
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataa 216  Q
    |||||||||  ||| ||||||||||||||||| |||||||||||||||    
T  31637003 ttggattggcatatttttgagcttacgaaaaacagcttatgcaaataa 31637050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 10537138 - 10537184
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaata 215  Q
    ||||||||| |||| |||||| ||| |||||||||||||||||||||    
T  10537138 ttggattggcttatttttgagtttatgaaaaatagcttatgcaaata 10537184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 13739403 - 13739341
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaagttttgatgat 231  Q
    ||||||||| |||| |||||| ||| |||||||| ||||||||||||| |||| ||| |||||    
T  13739403 ttggattggcttatttttgagtttatgaaaaataacttatgcaaataaataagcttttatgat 13739341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 14243989 - 14243943
Alignment:
Q  179 ttatctttgagcttacgaaaaatagcttatgcaaataagtaagtttt 225  Q
    |||| |||||||||| |||||||||||| ||||||||| ||||||||    
T  14243989 ttatttttgagcttatgaaaaatagcttttgcaaataaataagtttt 14243943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 2577350 - 2577387
Alignment:
Q  179 ttatctttgagcttacgaaaaatagcttatgcaaataa 216  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  2577350 ttatttttgagcttatgaaaaatagcttatgcaaataa 2577387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 29659219 - 29659178
Alignment:
Q  184 tttgagcttacgaaaaatagcttatgcaaataagtaagtttt 225  Q
    |||||||||| |||||| ||||||||||||||| ||||||||    
T  29659219 tttgagcttatgaaaaagagcttatgcaaataaataagtttt 29659178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 29922104 - 29922153
Alignment:
Q  172 gattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    |||||| |||| |||||| ||| |||||||||||||||||||||| ||||    
T  29922104 gattggcttatttttgagtttatgaaaaatagcttatgcaaataaataag 29922153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 1576805 - 1576757
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaat-agcttatgcaaataa 216  Q
    ||||||||| |||| |||||||||| ||||||| |||||||||||||||    
T  1576805 ttggattggcttatttttgagcttatgaaaaattagcttatgcaaataa 1576757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 1608010 - 1608058
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaat-agcttatgcaaataa 216  Q
    ||||||||| |||| |||||||||| ||||||| |||||||||||||||    
T  1608010 ttggattggcttatttttgagcttatgaaaaattagcttatgcaaataa 1608058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 35083413 - 35083361
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    |||||||||||||| |||||| ||| || |||||| |||||||||||| ||||    
T  35083413 ttggattggtttatttttgagtttatgataaatagtttatgcaaataaataag 35083361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 35537018 - 35536966
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||  |||| |||||| ||| |||||||||||||||||||||| ||||    
T  35537018 ttggattgacttatttttgagattatgaaaaatagcttatgcaaataaataag 35536966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 17223003 - 17222947
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaagtttt 225  Q
    ||||||||| |||| |||||||||| |||||||||||||| ||||||| ||||||||    
T  17223003 ttggattggcttatttttgagcttatgaaaaatagcttattcaaataaataagtttt 17222947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 42153074 - 42153126
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||| |||| |||||||||||| |||||||||||||||||||| ||||    
T  42153074 ttggattggcttatttttgagcttacgtaaaatagcttatgcaaataaataag 42153126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 48591336 - 48591388
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||| |||| |||||||||| |||||||||||||||||||||| ||||    
T  48591336 ttggattggcttatttttgagcttatgaaaaatagcttatgcaaataaataag 48591388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 12495556 - 12495612
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaagtttt 225  Q
    ||||||||  |||| |||||||||| ||||| |||||||||||||||| ||||||||    
T  12495556 ttggattgtcttatttttgagcttatgaaaagtagcttatgcaaataaataagtttt 12495612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 23297407 - 23297459
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||| |||| |||||||||| | |||||||||||||||||||| ||||    
T  23297407 ttggattggcttatttttgagcttatgcaaaatagcttatgcaaataaataag 23297459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 23297601 - 23297557
Alignment:
Q  177 gtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    |||||| |||||||||| |||||||||||||||||||||| ||||    
T  23297601 gtttatttttgagcttatgaaaaatagcttatgcaaataaataag 23297557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 36741078 - 36741026
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||| |||| ||| |||||| |||||||||||||||||||||| ||||    
T  36741078 ttggattggcttattttttagcttatgaaaaatagcttatgcaaataaataag 36741026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 3564380 - 3564333
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataa 216  Q
    ||||||||  |||| |||||||||| ||||||||||||||||||||||    
T  3564380 ttggattgacttatttttgagcttatgaaaaatagcttatgcaaataa 3564333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 30956857 - 30956802
Alignment:
Q  170 tggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaagtttt 225  Q
    |||||||  |||| ||| |||||| |||||||||||||||||||||| ||||||||    
T  30956857 tggattgacttattttttagcttatgaaaaatagcttatgcaaataaataagtttt 30956802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 18630822 - 18630859
Alignment:
Q  184 tttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  18630822 tttgagcttatgaaaaatagcttatgcaaataaataag 18630859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 42617157 - 42617198
Alignment:
Q  184 tttgagcttacgaaaaatagcttatgcaaataagtaagtttt 225  Q
    |||||||||| ||||||||||||||| |||||| ||||||||    
T  42617157 tttgagcttatgaaaaatagcttatgtaaataaataagtttt 42617198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 4331504 - 4331448
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaagtttt 225  Q
    ||||||| | ||||||||||| ||| |||||||| |||||| |||||| ||||||||    
T  4331504 ttggatttgcttatctttgagtttatgaaaaataacttatgtaaataaataagtttt 4331448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 11298741 - 11298709
Alignment:
Q  184 tttgagcttacgaaaaatagcttatgcaaataa 216  Q
    |||||||||| ||||||||||||||||||||||    
T  11298741 tttgagcttatgaaaaatagcttatgcaaataa 11298709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 28074538 - 28074486
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||| |||| ||| || ||| |||||||||||||||||||||| ||||    
T  28074538 ttggattggcttattttttagtttatgaaaaatagcttatgcaaataaataag 28074486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 48667844 - 48667792
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||| |||| ||| |||| | |||||||||||||||||||||| ||||    
T  48667844 ttggattggcttatttttaagctcatgaaaaatagcttatgcaaataaataag 48667792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 47413546 - 47413494
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||| |||| |||||||||| |||||||||||||||||||||| ||||    
T  47413546 ttggattggcttatttttgagcttatgaaaaatagcttatgcaaataaataag 47413494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 37712241 - 37712194
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataa 216  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  37712241 ttggattgacttatttttgagcttacgaaaaatagcttatgcaaataa 37712194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 41196622 - 41196674
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||| |||| |||||||||| | |||||||||||||||||||| ||||    
T  41196622 ttggattggcttatttttgagcttatgtaaaatagcttatgcaaataaataag 41196674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 45267636 - 45267588
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataag 217  Q
    |||| |||| |||| |||||||||| |||||||||||||||||||||||    
T  45267636 ttgggttggattatttttgagcttatgaaaaatagcttatgcaaataag 45267588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 48819473 - 48819421
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||| |||| ||| |||||| |||||||||||||||||||||| ||||    
T  48819473 ttggattggcttattttttagcttatgaaaaatagcttatgcaaataaataag 48819421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 42367124 - 42367070
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaagtt 223  Q
    ||||||| | |||| ||| |||||| |||||||||||||||||||||| ||||||    
T  42367124 ttggatttgcttatttttaagcttatgaaaaatagcttatgcaaataaataagtt 42367070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 15235088 - 15235129
Alignment:
Q  184 tttgagcttacgaaaaatagcttatgcaaataagtaagtttt 225  Q
    |||||||||| ||||||||||||||| |||||| ||||||||    
T  15235088 tttgagcttatgaaaaatagcttatgtaaataaataagtttt 15235129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 28690163 - 28690126
Alignment:
Q  184 tttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  28690163 tttgagcttatgaaaaatagcttatgcaaataaataag 28690126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 1321511 - 1321563
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||  |||| |||||||||||| ||||| |||||||||||||| ||||    
T  1321511 ttggattgacttatttttgagcttacgcaaaatggcttatgcaaataaataag 1321563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 1565287 - 1565338
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||| |||| |||||||||| |||||||||||| ||||||||| ||||    
T  1565287 ttggattggcttatttttgagcttatgaaaaatagctt-tgcaaataaataag 1565338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 9572712 - 9572748
Alignment:
Q  185 ttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  9572712 ttgagcttatgaaaaatagcttatgcaaataaataag 9572748  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 42591540 - 42591500
Alignment:
Q  185 ttgagcttacgaaaaatagcttatgcaaataagtaagtttt 225  Q
    ||||||||| ||||||||||||||| |||||| ||||||||    
T  42591540 ttgagcttatgaaaaatagcttatgtaaataaataagtttt 42591500  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 20888738 - 20888692
Alignment:
Q  179 ttatctttgagcttacgaaaaatagcttatgcaaataagtaagtttt 225  Q
    |||| |||||||||| |||||||| ||||||||||||||||||||||    
T  20888738 ttatttttgagcttatgaaaaataacttatgcaaataagtaagtttt 20888692  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 25908468 - 25908412
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaagtttt 225  Q
    ||||||||| |||| |||||| ||| ||||||| |||||||||||||| ||||||||    
T  25908468 ttggattggcttatttttgaggttatgaaaaatggcttatgcaaataaataagtttt 25908412  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 38372732 - 38372685
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataa 216  Q
    ||||||||| |||| |||||||||| ||||||||||| ||||||||||    
T  38372732 ttggattgggttatttttgagcttatgaaaaatagctaatgcaaataa 38372685  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 40629345 - 40629392
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataa 216  Q
    ||||||||| |||| |||||||||| ||||||||||||| ||||||||    
T  40629345 ttggattggcttatttttgagcttatgaaaaatagcttaggcaaataa 40629392  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 47511219 - 47511177
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgca 211  Q
    |||||||||||||| |||||| ||| |||||||||||||||||    
T  47511219 ttggattggtttatttttgaggttatgaaaaatagcttatgca 47511177  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 22032921 - 22032880
Alignment:
Q  184 tttgagcttacgaaaaatagcttatgcaaataagtaagtttt 225  Q
    |||||||||| |||||| ||||||||||||||| ||||||||    
T  22032921 tttgagcttatgaaaaaaagcttatgcaaataaataagtttt 22032880  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 29378819 - 29378767
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||  |||| |||||| ||| |||||||||||||||||||||| ||||    
T  29378819 ttggattgacttatttttgagtttatgaaaaatagcttatgcaaataaataag 29378767  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 29390463 - 29390515
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||  |||| |||||||||| ||||||||| |||||||||||| ||||    
T  29390463 ttggattgacttatttttgagcttatgaaaaatagtttatgcaaataaataag 29390515  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 33205008 - 33204956
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||| |||| ||| |||||| |||||||| ||||||||||||| ||||    
T  33205008 ttggattggcttattttttagcttatgaaaaatatcttatgcaaataaataag 33204956  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 34923103 - 34923055
Alignment:
Q  173 attggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||| |||| ||||||||||  ||||||||||||||||||||| ||||    
T  34923103 attggcttatttttgagcttataaaaaatagcttatgcaaataaataag 34923055  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 43818806 - 43818846
Alignment:
Q  185 ttgagcttacgaaaaatagcttatgcaaataagtaagtttt 225  Q
    ||||||||| |||||| ||||||||||||||| ||||||||    
T  43818806 ttgagcttatgaaaaagagcttatgcaaataaataagtttt 43818846  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 44613401 - 44613437
Alignment:
Q  185 ttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  44613401 ttgagcttatgaaaaatagcttatgcaaataaataag 44613437  T

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Target: scaffold0157 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 24921 - 24865
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaagtttt 225  Q
    ||||||||  |||| |||||||||| ||||| |||||||||||||||| ||||||||    
T  24921 ttggattgtcttatttttgagcttatgaaaagtagcttatgcaaataaataagtttt 24865  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 35071340 - 35071392
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||| |||| ||| |||||| |||||||||||||||||||||| ||||    
T  35071340 ttggattggcttattttttagcttatgaaaaatagcttatgcaaataaataag 35071392  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 21891455 - 21891396
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaagttttgat 228  Q
    |||||||| || || |||||||||| | | |||||||||||||||||| |||||||||||    
T  21891455 ttggattgattaatttttgagcttatgcagaatagcttatgcaaataaataagttttgat 21891396  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 4808730 - 4808689
Alignment:
Q  184 tttgagcttacgaaaaatagcttatgcaaataagtaagtttt 225  Q
    |||||||||| ||||||||||||||| | |||||||||||||    
T  4808730 tttgagcttatgaaaaatagcttatgtatataagtaagtttt 4808689  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 6776963 - 6776926
Alignment:
Q  188 agcttacgaaaaatagcttatgcaaataagtaagtttt 225  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  6776963 agcttatgaaaaatagcttatgcaaataaataagtttt 6776926  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 29052491 - 29052450
Alignment:
Q  184 tttgagcttacgaaaaatagcttatgcaaataagtaagtttt 225  Q
    |||||||||| ||||||||||||||| |||||| ||||||||    
T  29052491 tttgagcttatgaaaaatagcttatgtaaataaataagtttt 29052450  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 32165188 - 32165229
Alignment:
Q  184 tttgagcttacgaaaaatagcttatgcaaataagtaagtttt 225  Q
    |||||||||| ||||||||||||||| |||||| ||||||||    
T  32165188 tttgagcttatgaaaaatagcttatgtaaataaataagtttt 32165229  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 6752970 - 6752934
Alignment:
Q  185 ttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  6752970 ttgagcttatgaaaaatagcttatgcaaataaataag 6752934  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 21025131 - 21025183
Alignment:
Q  169 ttggattggtttatctttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    |||||||| ||||| ||| ||||||  ||||||||||||||||||||| ||||    
T  21025131 ttggattgatttattttttagcttatcaaaaatagcttatgcaaataaataag 21025183  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 23239405 - 23239369
Alignment:
Q  185 ttgagcttacgaaaaatagcttatgcaaataagtaag 221  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  23239405 ttgagcttatgaaaaatagcttatgcaaataaataag 23239369  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 34223452 - 34223492
Alignment:
Q  185 ttgagcttacgaaaaatagcttatgcaaataagtaagtttt 225  Q
    ||||||||| ||||||||||||||| |||||| ||||||||    
T  34223452 ttgagcttatgaaaaatagcttatgtaaataaataagtttt 34223492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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