View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5174_high_12 (Length: 290)
Name: NF5174_high_12
Description: NF5174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5174_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 2 - 272
Target Start/End: Original strand, 52374350 - 52374620
Alignment:
| Q |
2 |
ctactactactactcaataactgttccttcttattcaaacgctgttaaacaaaattaactcaactcaaccaattgtttctttttcttcaattaactatgt |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52374350 |
ctactactactactcaataactgttccttcttattcaaacgctgttaaacaaaattaactcaactcaaccaattgtttctttttcttcaattaactatgt |
52374449 |
T |
|
| Q |
102 |
cggctcgcattgtagctgaagatgttcccgattcttattttgattttatggaaatggacgacttcacgcgccgccgtgacgccggtgatatgccgactct |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52374450 |
cggctcgcattgtagctgaagatgttcccgattcttatttcgattttatggaaatggacgacttcacgcgccgccgtgacgccggtgatatgccgactct |
52374549 |
T |
|
| Q |
202 |
cggacagcttctcaaacacgttggagatgtaaggaaagaagctatcggtgatggcagtgagacgccggtgc |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
52374550 |
cggacagcttctcaaacacgttggagatgtaaggaaagaagctattggtgatggcagtgagacgccggtgc |
52374620 |
T |
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