View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5174_high_13 (Length: 289)
Name: NF5174_high_13
Description: NF5174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5174_high_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 267
Target Start/End: Original strand, 37658674 - 37658927
Alignment:
| Q |
14 |
atcagattctggcttgctactccgacaagctctctttgtctgaataagaggattctcctcttcatcttcaatgttcacttgtttttcaaactcatcgccc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37658674 |
atcagattctggcttgctactccgacaagctctctttgtctgaataagaggattctcctcttcatcttcaacgttcacttgtttttcaaactcatcgccc |
37658773 |
T |
|
| Q |
114 |
ttaaaaactgggtgtacgtatgcctcctgaagataatgtctcaggttcaagtttggttcaatagcccgttcaagtgtatctttcaccatggcatcctgtc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37658774 |
ttaaaaactgggtgtacgtatgcctcctgaagataatgtctcaggttcaagtttggttcaatagcccgttcaagtgtatctttcaccatggcatcctgtc |
37658873 |
T |
|
| Q |
214 |
atcaaatctcatatatcagactaatgaggttaaatactagactaccattaatat |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37658874 |
atcaaatctcatatatcagactaatgaggttaaatactagactaccattaatat |
37658927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University