View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5174_high_2 (Length: 709)
Name: NF5174_high_2
Description: NF5174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5174_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 44567257 - 44566892
Alignment:
| Q |
1 |
aaatgcaacaacagaatgataatagatacttaccaaatagagataatactatgagaagacacgcacccaattgaactggtctgcggcttcccatttttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44567257 |
aaatgcaacaacagaatgataatagatacttaccaaatagagataatactatgagaagacacgcacccaattgaactggtctgcggcttcccatttttgt |
44567158 |
T |
|
| Q |
101 |
cccagcaattgtgtgaacattttcggttagagttgttgatcccattccagtaccccagagaccagccaacaaactagaaaaaccttctagaccaataccg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44567157 |
cccagcaattgtgtgaacattttcggttagagttgttgatcccattccagtaccccagagaccagccaacaaactagaaaaaccttctagaccaataccg |
44567058 |
T |
|
| Q |
201 |
cgacttagaaccccaggagttggaggtccagatgctgctaaaagtgaagaagtgtgatatgtgccaacctacaaggttaaaacaaatgaacctcaacaac |
300 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44567057 |
cgactaagaaccccaggagttggaggtccagatgctgctaaaagtgaagaagtgtgatatgtgccaacctacaaggttaaaacaaatgaacctcaacaac |
44566958 |
T |
|
| Q |
301 |
aaagtacaatgattatatatatcatttcaattttgacttagcatactgtaaacatttcatagatca |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44566957 |
aaagtacaatgattatatatatcatttcaattttgacttagcatactgtaaacatttcatagatca |
44566892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 36031503 - 36031769
Alignment:
| Q |
18 |
gataatagatacttaccaaatagagataatactatgagaagacacgcacccaattgaactggtctgcggcttcccatttttgtcccagcaattgtgtgaa |
117 |
Q |
| |
|
||||||||||||||||| | |||||||| ||||| |||| ||| |||||||||||||||| |||||||||||||||||| ||| |||||||||| |||| |
|
|
| T |
36031503 |
gataatagatacttacccacgagagataacactatcagaatacatgcacccaattgaactgctctgcggcttcccattttagtcacagcaattgtatgaa |
36031602 |
T |
|
| Q |
118 |
cattttcggttagagttgttgatcccattccagtaccccagagaccagccaacaaactagaaaaaccttctagaccaataccgcgacttagaaccccagg |
217 |
Q |
| |
|
||||||| |||| ||| || ||||| ||||||||||||||||||||||||| | |||||||| |||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
36031603 |
cattttcagttaaagtggtagatccagttccagtaccccagagaccagccaaaacactagaaagaccttccagaccaattccgcgactaagaaccccagg |
36031702 |
T |
|
| Q |
218 |
agttggaggtccagatgctgctaaaagtgaagaagtgtgatatgtgccaacctacaaggttaaaaca |
284 |
Q |
| |
|
||||||||||| ||||||| |||| | |||||| | ||||||| |||||||||||| ||||||||| |
|
|
| T |
36031703 |
agttggaggtctagatgctactaataatgaagatgcatgatatgagccaacctacaaagttaaaaca |
36031769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 402 - 532
Target Start/End: Complemental strand, 44566895 - 44566765
Alignment:
| Q |
402 |
atcaataaaaacacaagtttcattctgcggtgctaaaatttcaaatcttattttagggatagaaaatcgagtcatgcactgtgttgttccattgaacgag |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44566895 |
atcaataaaaacacaagtttcattctgcggtgctaaaatttcaaatcttattttagggatagaaaatcgagtcatgcactgtgttgttccattgaacgag |
44566796 |
T |
|
| Q |
502 |
atcaagttagactataaacgtactcagagtc |
532 |
Q |
| |
|
||||||||||||||| |||||| |||||||| |
|
|
| T |
44566795 |
atcaagttagactatcaacgtattcagagtc |
44566765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 590 - 691
Target Start/End: Complemental strand, 44566707 - 44566606
Alignment:
| Q |
590 |
ctaaccgaatccacagaagagattaaggaaacgacgcacatcacaatagccattttccaattgaacacaggagtaccccattgcagtggatagggaaatc |
689 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44566707 |
ctaaccgaatccacagaagagattaaggaaacgacacacatcacaatagccattttccaattgaacacaggagtaccccattgcagtggatagggaaatc |
44566608 |
T |
|
| Q |
690 |
ta |
691 |
Q |
| |
|
|| |
|
|
| T |
44566607 |
ta |
44566606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 590 - 688
Target Start/End: Original strand, 36032397 - 36032495
Alignment:
| Q |
590 |
ctaaccgaatccacagaagagattaaggaaacgacgcacatcacaatagccattttccaattgaacacaggagtaccccattgcagtggatagggaaat |
688 |
Q |
| |
|
|||||||||||||| || |||||||||||||| || |||||||||| |||||||||||| | ||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
36032397 |
ctaaccgaatccacggatgagattaaggaaaccacacacatcacaagagccattttccagtggaagacaggagtaccccattgcaatggatagggaaat |
36032495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 319 - 392
Target Start/End: Original strand, 36031837 - 36031910
Alignment:
| Q |
319 |
atatcatttcaattttgacttagcatactgtaaacatttcatagatcagttaattctattatttgacttatcta |
392 |
Q |
| |
|
|||| |||| |||||||| ||||||| ||| || |||||||||||||| || |||||||||||||||||||| |
|
|
| T |
36031837 |
atatgatttaaattttgatatagcatattgttaatctttcatagatcagtaaactctattatttgacttatcta |
36031910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 20124273 - 20124129
Alignment:
| Q |
84 |
cggcttcccatttttgtcccagcaattgtgtgaacattttcggttagagttgttgatcccattccagtaccccagagaccagccaacaaactagaaaaac |
183 |
Q |
| |
|
|||||||||||||| ||| | |||||||| |||||||||||||||| |||||| ||||| ||||||| ||||||||||||||||| | |||| ||| || |
|
|
| T |
20124273 |
cggcttcccattttagtcacggcaattgtatgaacattttcggttaaagttgtagatccagttccagttccccagagaccagccaagacactacaaagac |
20124174 |
T |
|
| Q |
184 |
cttctagaccaataccgcgacttagaaccccaggagttggaggtc |
228 |
Q |
| |
|
|||| | |||||| || ||||| ||||| |||||||||||||||| |
|
|
| T |
20124173 |
cttccaaaccaattcctcgactaagaactccaggagttggaggtc |
20124129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 590 - 691
Target Start/End: Complemental strand, 20122606 - 20122505
Alignment:
| Q |
590 |
ctaaccgaatccacagaagagattaaggaaacgacgcacatcacaatagccattttccaattgaacacaggagtaccccattgcagtggatagggaaatc |
689 |
Q |
| |
|
|||||||||||||| || |||||||||||||| || ||||| |||| |||||||||||| | || |||||| ||||||||| | ||||||||||||| |
|
|
| T |
20122606 |
ctaaccgaatccacggatgagattaaggaaaccacacacattacaagagccattttccagtgaaagacaggaacaccccattgtaacggatagggaaatc |
20122507 |
T |
|
| Q |
690 |
ta |
691 |
Q |
| |
|
|| |
|
|
| T |
20122506 |
ta |
20122505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 16069361 - 16069436
Alignment:
| Q |
2 |
aatgcaacaacagaatgataatagatacttaccaaatagagataatactatgagaagacacgcacccaattgaact |
77 |
Q |
| |
|
|||| ||||||| |||||||||||||||||| |||| |||||||||||| | |||||||| ||||| ||||||||| |
|
|
| T |
16069361 |
aatgaaacaacaaaatgataatagatacttagcaaagagagataatactgtcagaagacatgcacctaattgaact |
16069436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University