View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5174_high_7 (Length: 364)
Name: NF5174_high_7
Description: NF5174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5174_high_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 19301125 - 19300762
Alignment:
| Q |
1 |
aagggtcgatttcctttggtgacagagtcttctgataacaattcagttgttgttgaagaaaaatcaccttctgttgataccaagtttgctgttatgaacc |
100 |
Q |
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| T |
19301125 |
aagggtcgttttcctttggtgacagaatcttctgataacaattcagttgttgttgaagaaaaatcaccttctgttgataccaagtttgctgttatgaacc |
19301026 |
T |
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| Q |
101 |
gtggtaagaacattgttggtgctaaaaacaatggttttgagcttgctgagaagaagctgaacaaagacgggaagatgaaatcggtcgaaattggttatgt |
200 |
Q |
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| T |
19301025 |
gtggtaagaacattgttggcgctaaaaacaatggttttgagcttgctgagaagaagctgaacaaagacgggaagatgaaatcggtcgaaattggttatgt |
19300926 |
T |
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| Q |
201 |
ttctgataattcggattctggatacttcacttatggtcctaaaacagtagaatcagacgattcaagtgatggttttttcagaaatgatgctaagtcttca |
300 |
Q |
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| T |
19300925 |
ttctgataattcggattctggatacttcacttatggtcctaaaaaagtagaatcagatgattcaagtgatggttttttcaggaatgatgctaagtcttca |
19300826 |
T |
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| Q |
301 |
aaagttggatacttttctagtttccagaatcatgattttgactcaagcaagaagataataagca |
364 |
Q |
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| T |
19300825 |
aaagttggatacttttctagtttccaggatcatgattttgaatcaagcaagaagataataagca |
19300762 |
T |
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