View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5174_high_8 (Length: 355)
Name: NF5174_high_8
Description: NF5174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5174_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 345
Target Start/End: Complemental strand, 34810876 - 34810538
Alignment:
| Q |
20 |
ctaagttgacaacgttacttgtgatcccaacccttgtagaatattacttttttatttgatgaataccaattttctcattaaacagacggactaatgattc |
119 |
Q |
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| T |
34810876 |
ctaagttgacaacgttacttatgatcccaacc-ttgtagaatactacttttttatttgacgaataccaattttctcattaaacagacggactaatgattc |
34810778 |
T |
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| Q |
120 |
aggtgataaaaagaggtt-gaaccagtcatttcatttgttaaattaccggctatttca-------------gaagttttaaactcgatnnnnnnngttga |
205 |
Q |
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| T |
34810777 |
gggtgat-aaaagaggttcaaaccagtcacttcatttgttaaattaccggctatttcagatgacttaaattgaagttttaaacttgataactaaagttga |
34810679 |
T |
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| Q |
206 |
tccgattcatttaacccact-aaaaaacgaggtaggctgacttttccctatcttttagagtttactttgagattaagtttgatataaccaatctatttta |
304 |
Q |
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|||||||| ||||| ||||| ||||||||||| | |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34810678 |
tccgattcgtttaatccactaaaaaaacgaggcaagctgactttttcctatcttttagagtttactttaagattaagtttgatataaccaatctatttta |
34810579 |
T |
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| Q |
305 |
ttttgagtttattgttgaagcactaatttacttgatgatgt |
345 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34810578 |
ttttgagtttattgttgaagcactaatttacttcatgatgt |
34810538 |
T |
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