View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5174_low_1 (Length: 799)
Name: NF5174_low_1
Description: NF5174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5174_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 612; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 18 - 787
Target Start/End: Complemental strand, 17131300 - 17130527
Alignment:
| Q |
18 |
ataatatcgttcacaaaattgttcaaaatttctaaatccgtcatagttttcgatattgatagcaaagcatgtgacaagaatcccttgagtctctaaatat |
117 |
Q |
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| T |
17131300 |
ataatatcgttcacaaatttgttcaaaatttctagatccgtcatagttttcgatattgatagcaaagcatgtgacaagaatcccttgagtctctaaatat |
17131201 |
T |
|
| Q |
118 |
agaccccccttgcagctttggaagggttactcgttgatgagccattaatattgattttaatgtaaccaa----aggtttatggcaaatcacctcggtgca |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
17131200 |
agaccccccttgcagctttggaagggttactcgttgatgagccattaatattgattttaatataaccaacataaggtttatggcaaatcacctcggtgca |
17131101 |
T |
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| Q |
214 |
gttaagaggcttcatgtgccctgcagcaaccatgaagttgtcaatcactggaaaattaaattaaattttttatttaagtggccatgattgtgccacttta |
313 |
Q |
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| T |
17131100 |
gttaagaggcttcctctgccctgcaccaaccatgaagttgtcaatcactagaaaattaaattaaatttttgatttaagtggccatgattgtgccacttta |
17131001 |
T |
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| Q |
314 |
accaaaatagtttcaatttatgtgtgcgagttttagggaaggttttaaataaagttccatttccaagaaaaagctgttttaaaaaggtataggtagacac |
413 |
Q |
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||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||| |||| |||||||||| |||| |||| |
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| T |
17131000 |
accaaaatagtttcaatttatgtgtgcgacttttagggatggttttaaataaagttccattaccaagaaaaagccgtttcaaaaaggtatcggtaaacac |
17130901 |
T |
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| Q |
414 |
cgtttcagtttttctcgtttttatacaatgaaaagaagnnnnnnntcacgacaaaacgttgtcaaacgtgcgacgaaacaccattacagccgcaacaaaa |
513 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
17130900 |
cgttatagtttttctcgtttttatacaatgaaaagaaaaaaaaaatcacgacaaaacgttgtcaaatgtgcgacgaaacaccattacagccgtaacaaaa |
17130801 |
T |
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| Q |
514 |
tgtcattcgtaacaatagacgagtaatctctttatttttcaattgagatggacacaaatcacataatgttatctcctttaagctctttatctagttcaca |
613 |
Q |
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| T |
17130800 |
tgtcattcgtaacaatagacgagtaatttctttatttttcaattgagatggatacagatcacataatgttatctcctttaagctctttctctagttcaca |
17130701 |
T |
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| Q |
614 |
acttcaaatttgtctctaatttaagttattgatgctattatgagttgtgaaatgttatcattaattcacactgcgacgaccacaatccgcaacgcaatat |
713 |
Q |
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| T |
17130700 |
aattcaaatttgtctctaatttaagttattgatgctattatgagttgtgaaatgttatcattaattcacaccgcgacggccacaatccgcagcgcaatat |
17130601 |
T |
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| Q |
714 |
gcataacaactgaaatcacaaaatccttaacagaaccgcaaacttgaccattatttaaaacctttctagatatt |
787 |
Q |
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| T |
17130600 |
gcataacaactgaaatcacaaaatccttcacagaaccgcaacctcgaccattatttaaaacctttctagatatt |
17130527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 589 - 643
Target Start/End: Original strand, 31742947 - 31743001
Alignment:
| Q |
589 |
ctttaagctctttatctagttcacaacttcaaatttgtctctaatttaagttatt |
643 |
Q |
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| T |
31742947 |
ctttatgctctttatctacttcaaaacttcaaatctatctctaatttaagttatt |
31743001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 581 - 643
Target Start/End: Original strand, 33049177 - 33049238
Alignment:
| Q |
581 |
gttatctcctttaagctctttatctagttcacaacttcaaatttgtctctaatttaagttatt |
643 |
Q |
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| T |
33049177 |
gttatctcctttatgctctttatctagttta-aacttcaaatctatctctatttcaagttatt |
33049238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 640
Target Start/End: Complemental strand, 20141669 - 20141598
Alignment:
| Q |
569 |
aaatcacataatgttatctcctttaagctctttatctagttcacaacttcaaatttgtctctaatttaagtt |
640 |
Q |
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| T |
20141669 |
aaattacataattttatctcctttaggctctttctctaattgaaaatttcaaatctatctctaatttaagtt |
20141598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 642
Target Start/End: Complemental strand, 14867373 - 14867300
Alignment:
| Q |
569 |
aaatcacataatgttatctcctttaagctctttatctagttcacaacttcaaatttgtctctaatttaagttat |
642 |
Q |
| |
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|||| |||| ||||||||| ||| | ||||||| ||||||| | ||||||||| | ||||||||||||||||| |
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| T |
14867373 |
aaattacatgatgttatcttcttgaggctctttctctagtttaaaacttcaaacctatctctaatttaagttat |
14867300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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