View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5174_low_10 (Length: 330)
Name: NF5174_low_10
Description: NF5174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5174_low_10 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 67 - 330
Target Start/End: Complemental strand, 8139429 - 8139175
Alignment:
| Q |
67 |
aagaaacattagtaaatgatcaagactcatacaagagcagagacatcgttccaaaaacagtgatattcaagcatgcattcagtaacaaagactcaatnnn |
166 |
Q |
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| T |
8139429 |
aagaaacattactaaatgatcaagactcatacaagagcagagacatcattccaaaaacagtgatattcaagcatgcattcagtaacaaagactaaa---- |
8139334 |
T |
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| Q |
167 |
nnnnnnnnnnnnntcaacagatgcgcttcaaaaacacagattcatcattcatggaaatgatcatgattgcagaaataaatgatcaagatttttaaataaa |
266 |
Q |
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| T |
8139333 |
-----aaaaaaaatcaacagatgcgcttcaaaaacacagattcatcattcatagaaatgatcatgattgcagaaataaatgatcaagatttttaaataaa |
8139239 |
T |
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| Q |
267 |
tgagaaagatttttacataaatgattaagatttatacttaatgatcaagaaacataaaaaactg |
330 |
Q |
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| T |
8139238 |
tgagaaagatttttacataaatgattaagatttatacttaatgatcaagaaacataaaaaactg |
8139175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 32 - 282
Target Start/End: Original strand, 7499460 - 7499701
Alignment:
| Q |
32 |
tcgaaaggcatgagagaagatgtcaaattacacacaagaaacattagtaaatgatcaagactcatacaagagcagagacatcgttccaaaaacagtgata |
131 |
Q |
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| T |
7499460 |
tcgaaaggcgtgagagaagatgtcaaattacacacaagaaacattactacatgatcaagactcataaaagagcagaaacatcattccaaaaacagtgatg |
7499559 |
T |
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| Q |
132 |
ttcaagcatgcattcagtaacaaagactcaatnnnnnnnnnnnnnnnntcaacagatgcgcttcaaaaacacagattcatcattcatggaaatgatcatg |
231 |
Q |
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| T |
7499560 |
ttcaagcatgcattcagtaacaaagactcaa--------aaaaaaaaatcaacagatgagcttc-aaaacacagattcatcattcatagaagtgatcatg |
7499650 |
T |
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| Q |
232 |
attgcagaaataaatgatcaagatttttaaataaatgagaaagatttttac |
282 |
Q |
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| T |
7499651 |
attgcagaaataaatgataaagatttttagataaatgattaagatttttac |
7499701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 200 - 330
Target Start/End: Original strand, 7502967 - 7503102
Alignment:
| Q |
200 |
acacagattcatcattcatggaaatgatcat--gattgcagaaataaatgatcaagatttttaaataaatgagaa---agatttttacataaatgattaa |
294 |
Q |
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| T |
7502967 |
acacagattcatcattcatagaagtgatcatatgattgcagaaataaatgatcaatatttttacataaatgattaatgatatttttacataaatgatcag |
7503066 |
T |
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| Q |
295 |
gatttatacttaatgatcaagaaacataaaaaactg |
330 |
Q |
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| T |
7503067 |
gatttttacttaatgatcaagaaacataaaaaactg |
7503102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 7502831 - 7502928
Alignment:
| Q |
56 |
aaattacacacaagaaacattagtaaatgatcaagactcatacaagagcagagacatcgttccaaaaacagtgatattcaagcatgcattcagtaacaaa |
155 |
Q |
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| T |
7502831 |
aaattacagataagaaacattactgaatgatcaagactaaaaaaa----atagacatcattccaaaaacagtgatatccaagcatgcaatcagtaacaaa |
7502926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 51
Target Start/End: Complemental strand, 8139456 - 8139426
Alignment:
| Q |
21 |
aaagagtacggtcgaaaggcatgagagaaga |
51 |
Q |
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| T |
8139456 |
aaagagtacggtcgaaaggcatgagagaaga |
8139426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 7503119 - 7503160
Alignment:
| Q |
201 |
cacagattcatcattcatggaaatgatcatgattgcagaaat |
242 |
Q |
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| T |
7503119 |
cacaaattcatcattcatagaagtgatcatgattgcagaaat |
7503160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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