View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5174_low_3 (Length: 664)
Name: NF5174_low_3
Description: NF5174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5174_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 458 - 660
Target Start/End: Original strand, 19300554 - 19300756
Alignment:
| Q |
458 |
atgttcttattgctttgtgcctttggtgcaggataagaatcactttctgagctgttttcatcactctcataagctgaatcttcagaataactttctctat |
557 |
Q |
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| T |
19300554 |
atgttcttattgctttgtgcctttggagcaggataagaatcactttctgagctgttttcatcactctcataagctgaatcttcagaataactttctctat |
19300653 |
T |
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| Q |
558 |
caatcttcaaactctcatacacttcattgttataaccattttttgttttcttgctagaattttccaaaactactttcttgaattcagcactgtttctgtt |
657 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19300654 |
caatcttcaaactctcatacacttcattgttataaccattttttgttttcttgctagaattttccaaaactactttcttgaattcagcactgtttctgtt |
19300753 |
T |
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| Q |
658 |
tct |
660 |
Q |
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||| |
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| T |
19300754 |
tct |
19300756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 19300091 - 19300291
Alignment:
| Q |
17 |
aataatgaatctaagaaaccatnnnnnnngtaccaaccaattacccacttgtctgtacattgtcattgctttcagcatatatgggataaagacaaaacct |
116 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
19300091 |
aataatgaatctaagaaaccataaaaaa-gtaccaaccaattacccacttgtctgtacattgtcattgctttcatcatat--gggataaagacaaaacct |
19300187 |
T |
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| Q |
117 |
ttttcataattccttaacaaaa-aacatgcttcaaaatgatccaaaaccaaaacctttattcatcatcaggagcaggtagattaagatcaaataaagatg |
215 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19300188 |
ttttcataattccttaacaaaaaaacatgcttcaaaatgacccaaaaccaaaacctttattcatcatcaggagcaggtagattaagatcaaataaagatg |
19300287 |
T |
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| Q |
216 |
gatt |
219 |
Q |
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|||| |
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| T |
19300288 |
gatt |
19300291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 277 - 387
Target Start/End: Original strand, 19300373 - 19300483
Alignment:
| Q |
277 |
tggtctaatcacaagagtgttatcatcatttcctccaataaaatgggaccttttgtgaccccctaaagcttgtcctgacttgaaaatcttgttacaaatt |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19300373 |
tggtctaatcacaagagtgttatcatcatttcctccaataaaatgggatcttttgtgaccccctaaagcttgtcctgacttgaaaatcttgttgcaaatt |
19300472 |
T |
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| Q |
377 |
ggacattcatg |
387 |
Q |
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||||||||||| |
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| T |
19300473 |
ggacattcatg |
19300483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 284 - 386
Target Start/End: Original strand, 32265853 - 32265955
Alignment:
| Q |
284 |
atcacaagagtgttatcatcatttcctccaataaaatgggaccttttgtgaccccctaaagcttgtcctgacttgaaaatcttgttacaaattggacatt |
383 |
Q |
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||||||| |||||| || ||| |||||||| |||||| || ||||| || || ||||| |||||||||||| ||||||| |||| ||||||||||||| |
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| T |
32265853 |
atcacaaaagtgttctcttcagatcctccaacaaaatgtgatcttttatgtcctcctaatgcttgtcctgacctgaaaattttgtagcaaattggacatt |
32265952 |
T |
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| Q |
384 |
cat |
386 |
Q |
| |
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||| |
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| T |
32265953 |
cat |
32265955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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