View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5174_low_5 (Length: 484)
Name: NF5174_low_5
Description: NF5174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5174_low_5 |
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| [»] scaffold0137 (2 HSPs) |
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Alignment Details
Target: scaffold0137 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 4673 - 4953
Alignment:
| Q |
16 |
atcattgttgacgtgtccgtgcttcatagaaaacattcatcacaaattaaaggaagaacacaactattagtataacttcatagtgcatatatccctcata |
115 |
Q |
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| T |
4673 |
atcattgttgacgtatccgtgcttcatagaaaacattcatcacaaattaatggaagaacacaactattagtataacttcatagtgcatatatccctcata |
4772 |
T |
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| Q |
116 |
gtcattgcaaaacaaacaaacaagattggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccg |
215 |
Q |
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| T |
4773 |
gtcattgcaaaacaaacaaacaagattggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccg |
4872 |
T |
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| Q |
216 |
agaaattcaaagccaaacccaatcttataggatgagaagatcgaagatccgccgtagcaatatccttcaaacaatcacaac |
296 |
Q |
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| T |
4873 |
agaaattcaaagccaaacccaatcttataggatgagaagatcgaagatccgcagcagcaatatccttcaaacaatcacaac |
4953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 390 - 474
Target Start/End: Original strand, 5044 - 5128
Alignment:
| Q |
390 |
cctgtgcagccttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttg |
474 |
Q |
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| T |
5044 |
cctgtgcagccttgtaagacaagataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttg |
5128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 265; Significance: 1e-147; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 3897017 - 3897297
Alignment:
| Q |
16 |
atcattgttgacgtgtccgtgcttcatagaaaacattcatcacaaattaaaggaagaacacaactattagtataacttcatagtgcatatatccctcata |
115 |
Q |
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| T |
3897017 |
atcattgttgacgtatccgtgcttcatagaaaacattcatcacaaattaatggaagaacacaactattagtataacttcatagtgcatatatccctcata |
3897116 |
T |
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| Q |
116 |
gtcattgcaaaacaaacaaacaagattggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccg |
215 |
Q |
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| T |
3897117 |
gtcattgcaaaacaaacaaacaagattggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccg |
3897216 |
T |
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| Q |
216 |
agaaattcaaagccaaacccaatcttataggatgagaagatcgaagatccgccgtagcaatatccttcaaacaatcacaac |
296 |
Q |
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| T |
3897217 |
agaaattcaaagccaaacccaatcttataggatgagaagatcgaagatctgccgcagcaatatccttcaaacaatcacaac |
3897297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 390 - 474
Target Start/End: Original strand, 3898713 - 3898797
Alignment:
| Q |
390 |
cctgtgcagccttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttg |
474 |
Q |
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| T |
3898713 |
cctgtgcagccttgtaagacaagataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttg |
3898797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 133 - 282
Target Start/End: Complemental strand, 46283795 - 46283646
Alignment:
| Q |
133 |
aaacaagattggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccgagaaattcaaagccaaa |
232 |
Q |
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||||||||| ||||||||||||||||| | ||||||||| | ||| |||| | | || |||||||| ||||||||||| |||||||| | ||||||| |
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| T |
46283795 |
aaacaagatcagattaacacaaacctgtttggccatgtcacaagctttgtcagattgattgagaatttcgtaatagaaaacagagaaattgagagccaaa |
46283696 |
T |
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| Q |
233 |
cccaatcttataggatgagaagatcgaagatccgccgtagcaatatcctt |
282 |
Q |
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| T |
46283695 |
cccaatcttataggatgagttgatggaagatccgcagcagcaatatcctt |
46283646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 390 - 471
Target Start/End: Complemental strand, 46283571 - 46283490
Alignment:
| Q |
390 |
cctgtgcagccttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacct |
471 |
Q |
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| T |
46283571 |
cctgtgcagctttgtaagacaacatagtatcctcagcagcagattttttctcatcaccaatcttaaactcagccaaatacct |
46283490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 39356413 - 39356450
Alignment:
| Q |
200 |
tcataatagaaaaccgagaaattcaaagccaaacccaa |
237 |
Q |
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| T |
39356413 |
tcataatagaaaactgagaaattcaaagccagacccaa |
39356450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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