View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5174_low_6 (Length: 371)
Name: NF5174_low_6
Description: NF5174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5174_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 48649039 - 48648686
Alignment:
| Q |
11 |
tattcttaaaatatactctagaaaaatcttaaaagaggccgttgtagttagtcaaaaagaagatgcaattggccattacaaagcacccagcagttaattg |
110 |
Q |
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| T |
48649039 |
tattcttgaaatatactctagaaaaagcttaaaagagtccgttgtatttagtcaaaaagaagatgccattggccattacaaatcacccagcagttaattg |
48648940 |
T |
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| Q |
111 |
gcccactaagaggaaactttatgatgtttgatatgcagatgcaccgtattatatcgatcggtacggaagaataaaataaaaaagggacagagagcatgca |
210 |
Q |
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| T |
48648939 |
gcccactaagaggaaactttatgatgtttg--atgcagatgcaccgtattatatcgatcggtacggaagaataaaataaaaaagggacagagagcatgca |
48648842 |
T |
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| Q |
211 |
tgcccgaactcaactactaataagtcnnnnnnnnnnnnnnnnnttaatccaacactcgaactacaagtttgattctcattctcaagagaaaacaaattaa |
310 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48648841 |
tgcccgaactgaactactaataagtcaaaaagagaaagaaaaattaatccaacactcgaactacaagtttgattctcattctcaagagaaaacaaattaa |
48648742 |
T |
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| Q |
311 |
gaacccatccattcatccactcgtgctgcaagattcatattcaatttcttctcact |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48648741 |
gaacccatccattcatccactcgtgctgcaagattcatattcaaattcttctcact |
48648686 |
T |
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