View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5174_low_9 (Length: 331)
Name: NF5174_low_9
Description: NF5174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5174_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 34810452 - 34810140
Alignment:
| Q |
1 |
taaaaaacagttacaacttgaataatttaaatttagtatatatacacgtacgtgtaagtgataaatgtttacttcatatcatgaaagagacaagtnnnnn |
100 |
Q |
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| T |
34810452 |
taaaaaacagttacaacttgaataattta------gtatatatacacgtacatgtaagtgataaatgtttacttcatatcatgaaagagacaagtaaaaa |
34810359 |
T |
|
| Q |
101 |
nnnnnnnnnnnnnnngtgtgtatttatagtactttatcatagatacgtgttaagtatgtttcataatcgacaaagaaagaactaagaagaacatggcaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34810358 |
cttaaaaacaaaaaagtgtgtatttatagtactttatcatagatacgtgttaagtatgtttcataatcgacaaagaaagaactaagaagaacatggcaaa |
34810259 |
T |
|
| Q |
201 |
aagacaaacaaacctgcaattatatctgccccaccactgatgtacttggagatactatgaacaacaacatcagcaccaagcttcaccggcgaaatcacca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34810258 |
aagacaaacaaacctgcaattatatctgccccaccactgatgtacttggagatactatgaacaacaacatcagcaccaagcttcaccggcgaaatcacca |
34810159 |
T |
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| Q |
301 |
tcggagtaaaagtattatc |
319 |
Q |
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||||||||||||||||||| |
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| T |
34810158 |
tcggagtaaaagtattatc |
34810140 |
T |
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