View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5175-Insertion-10 (Length: 172)
Name: NF5175-Insertion-10
Description: NF5175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5175-Insertion-10 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 157; Significance: 9e-84; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 9e-84
Query Start/End: Original strand, 8 - 172
Target Start/End: Original strand, 36210824 - 36210988
Alignment:
| Q |
8 |
acagttactaatctgctaccactatttctgctaacatttacatggctgaatcatttgtgtttaatattgctgattcactatttatgaagatgcttcacga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36210824 |
acagttactaatctgctaccactatttctgctaacattgacatggctgaatcatttgtgtttaatattgctgattcactatttatgaagatgcttcacga |
36210923 |
T |
|
| Q |
108 |
tcctatggtggatgctgatgagaagaagaagggaccaaaagcatggtttgtgtgaatggcttgag |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36210924 |
tcctatggtggatgctgatgagaagaagaagggaccaaaagcatggtttgcgtgaatggcttgag |
36210988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 35978280 - 35978236
Alignment:
| Q |
42 |
catttacatggctgaatcatttgtgtttaatattgctgattcact |
86 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
35978280 |
catttccatggctgaatcatttgtgtttgatattgctcattcact |
35978236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 35999692 - 35999648
Alignment:
| Q |
42 |
catttacatggctgaatcatttgtgtttaatattgctgattcact |
86 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
35999692 |
catttccatggctgaatcatttgtgtttgatattgctcattcact |
35999648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 48 - 83
Target Start/End: Complemental strand, 36226721 - 36226686
Alignment:
| Q |
48 |
catggctgaatcatttgtgtttaatattgctgattc |
83 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
36226721 |
catggccgaatcatttgtgtttgatattgctgattc |
36226686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University