View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5175-Insertion-11 (Length: 83)
Name: NF5175-Insertion-11
Description: NF5175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5175-Insertion-11 |
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| [»] chr4 (4 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 76; Significance: 8e-36; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 8e-36
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 33750514 - 33750439
Alignment:
| Q |
8 |
cgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcc |
83 |
Q |
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| T |
33750514 |
cgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcc |
33750439 |
T |
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Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-19
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 33719041 - 33718966
Alignment:
| Q |
8 |
cgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcc |
83 |
Q |
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| T |
33719041 |
cgagccaaacacgaacagcacgtctcgggtcacgaatctcagcagcccattttccccatggtctctgtctcactcc |
33718966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 33721043 - 33720985
Alignment:
| Q |
25 |
gcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcc |
83 |
Q |
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| T |
33721043 |
gcacgtctcgggtcacgaatctcagcagcccattttccccatggtctctgcctcactcc |
33720985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 33735712 - 33735639
Alignment:
| Q |
10 |
agccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcc |
83 |
Q |
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| T |
33735712 |
agccaaacacggaccgcacgtctagggtcacgaatctcagcagcccattttccccatggcctctgcctcactcc |
33735639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 6583102 - 6583053
Alignment:
| Q |
34 |
gggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcc |
83 |
Q |
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|||||||| |||||||| |||||||| ||||||||||||||||||||||| |
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| T |
6583102 |
gggtcacgtatttcagctgcccattttccccatggtctttgtctcactcc |
6583053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 6568943 - 6568894
Alignment:
| Q |
34 |
gggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcc |
83 |
Q |
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|||||||| |||||||| |||||||| ||||||||||| ||||||||||| |
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| T |
6568943 |
gggtcacgtatttcagctgcccattttccccatggtctctgtctcactcc |
6568894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 13409921 - 13409881
Alignment:
| Q |
43 |
atttcagcagcccatttaccccatggtctttgtctcactcc |
83 |
Q |
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||||| || |||||||| ||||||||||||||||||||||| |
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| T |
13409921 |
atttctgctgcccattttccccatggtctttgtctcactcc |
13409881 |
T |
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