View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5175-Insertion-12 (Length: 228)

Name: NF5175-Insertion-12
Description: NF5175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5175-Insertion-12
NF5175-Insertion-12
[»] chr3 (21 HSPs)
chr3 (6-224)||(10373503-10373721)
chr3 (6-228)||(10262891-10263113)
chr3 (30-228)||(10519699-10519897)
chr3 (32-228)||(10034219-10034415)
chr3 (37-228)||(9841079-9841270)
chr3 (48-224)||(10665698-10665874)
chr3 (32-227)||(10129141-10129336)
chr3 (30-228)||(10431698-10431896)
chr3 (37-228)||(10582832-10583023)
chr3 (30-228)||(9851953-9852151)
chr3 (43-225)||(10361461-10361643)
chr3 (48-228)||(11779639-11779819)
chr3 (32-226)||(10091010-10091204)
chr3 (32-226)||(10197892-10198086)
chr3 (48-228)||(11771466-11771646)
chr3 (37-228)||(10502804-10502994)
chr3 (48-228)||(13853118-13853298)
chr3 (69-224)||(10967364-10967519)
chr3 (100-220)||(11244188-11244308)
chr3 (68-225)||(13397732-13397889)
chr3 (172-217)||(11230092-11230137)
[»] scaffold0083 (1 HSPs)
scaffold0083 (32-228)||(55259-55455)
[»] chr2 (1 HSPs)
chr2 (48-225)||(26909120-26909297)
[»] chr4 (1 HSPs)
chr4 (66-228)||(17850583-17850745)
[»] chr8 (1 HSPs)
chr8 (100-213)||(11487313-11487426)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 10373721 - 10373503
Alignment:
Q  6 caagaagtagttattcgtgaatgagttaagttattagctgttccaaaattgattcggagaagcacttgtcttacacacttggaactcaattctcttcctt 105  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||    
T  10373721 caagaagtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttggaactcgattctctttctt 10373622  T
Q  106 ctctcactgcatttccctcaggtggtctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggag 205  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| | |  ||| ||||||||||||||||||||| ||||| ||||||    
T  10373621 ctctcactgcatttccctcaagtggtctacccacttcattgcaatcacttgaaattagatactgtgagaatttatccttccttcctcttgaaatgtggag 10373522  T
Q  206 caattacacatcacttgtg 224  Q
    |||||||||||||||||||    
T  10373521 caattacacatcacttgtg 10373503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 10262891 - 10263113
Alignment:
Q  6 caagaagtagttattcgtgaatgagttaagttattagctgttccaaaattgattcggagaagcacttgtcttacacacttggaactcaattctcttcctt 105  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||| |||||||||||    
T  10262891 caagaagtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtctaacacacttgaaactcagttctcttcctt 10262990  T
Q  106 ctctcactgcatttccctcaggtggtctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggag 205  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||      ||| ||||||||||||||||||||||||||||||||||    
T  10262991 ctctcactacatttccctcaagtggtctacccacttcattgcaatcacttgaaattgtaaattgtgagaatttatccttccttcctcctgaaacgtggag 10263090  T
Q  206 caattacacatcacttgtgagtc 228  Q
    |||||||||||||||||||||||    
T  10263091 caattacacatcacttgtgagtc 10263113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 10519699 - 10519897
Alignment:
Q  30 gttaagttattagctgttccaaaattgattcggagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaggtg 129  Q
    |||||| |||||||||| ||||||||||||| || ||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||| |||    
T  10519699 gttaagctattagctgtgccaaaattgattctgaaaagcacttgtcttacacacttgggactcgattctctttcttctctcactgcatttccctcaagtg 10519798  T
Q  130 gtctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtc 228  Q
    |||||||||||||||||||||||||| |||||   |  ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10519799 gtctacccacttcattgcaatcacttaatattcaatgttgtgagaatttatccttccttcctcctgaaacgtggatcaattacacatcacttgtgagtc 10519897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 32 - 228
Target Start/End: Original strand, 10034219 - 10034415
Alignment:
Q  32 taagttattagctgttccaaaattgattcggagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaggtggt 131  Q
    |||| |||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||     
T  10034219 taagctattagctgtgccaaaattgattttgagaagcacttgtcttacacacttggaactcaattctctttcttctctcactgcatttccctcaagtgga 10034318  T
Q  132 ctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtc 228  Q
    |||||||||||||||||||||||| |||||      ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10034319 ctacccacttcattgcaatcacttcatattgtaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgagtc 10034415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 37 - 228
Target Start/End: Original strand, 9841079 - 9841270
Alignment:
Q  37 tattagctgttccaaaattgattcggagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaggtggtctacc 136  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||  |||| |||||||| ||||||||||||||||||||||| ||||||||||    
T  9841079 tattagttgttccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcttctctcactgcatttccctcaagtggtctacc 9841178  T
Q  137 cacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtc 228  Q
    ||||||||||||||||||| ||||| |    ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9841179 cacttcattgcaatcacttcatattcgtagttgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgagtc 9841270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 48 - 224
Target Start/End: Original strand, 10665698 - 10665874
Alignment:
Q  48 ccaaaattgattcggagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaggtggtctacccacttcattgc 147  Q
    ||||||||||||  |||||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  10665698 ccaaaattgattatgagaagcacttgtcttacacacttggcactctattcactttcttctctcactgcatttccctcaagtggtctacccacttcattgc 10665797  T
Q  148 aatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtg 224  Q
    |||||||| |||||| || |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10665798 aatcacttaatattttgtggtgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtg 10665874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 32 - 227
Target Start/End: Original strand, 10129141 - 10129336
Alignment:
Q  32 taagttattagctgttccaaaattgattcggagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaggtggt 131  Q
    |||| |||||||||| ||||||||||||| || ||||||||||||||||||||||  |||| |||||||| ||||||||||||||||||||||| ||||     
T  10129141 taagctattagctgtgccaaaattgattctgaaaagcacttgtcttacacacttgagactctattctctttcttctctcactgcatttccctcaagtgga 10129240  T
Q  132 ctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagt 227  Q
    |||||||||||||||||||||||| |||||      ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10129241 ctacccacttcattgcaatcacttcatattgaaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgagt 10129336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 30 - 228
Target Start/End: Complemental strand, 10431896 - 10431698
Alignment:
Q  30 gttaagttattagctgttccaaaattgattcggagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaggtg 129  Q
    |||||| |||||| ||| ||||||||||||| |||||||||||||||||||||||||  |||| |||||||| ||||||||||||||||||| ||| |||    
T  10431896 gttaagctattagttgtgccaaaattgattctgagaagcacttgtcttacacacttgagactcgattctctttcttctctcactgcatttccatcaagtg 10431797  T
Q  130 gtctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtc 228  Q
    |||||||||||||||||||||||||||| |||      ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  10431796 gtctacccacttcattgcaatcacttgaaattgaaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtcagtc 10431698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 37 - 228
Target Start/End: Original strand, 10582832 - 10583023
Alignment:
Q  37 tattagctgttccaaaattgattcggagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaggtggtctacc 136  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||  |||| |||||||| ||||||||||| ||||||||||| ||||||||||    
T  10582832 tattagctgtgccaaaattgattctgagaagcacttgtcttacacacttgagactctattctctttcttctctcactacatttccctcaagtggtctacc 10582931  T
Q  137 cacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtc 228  Q
    ||||||||||||||||||| ||||       ||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  10582932 cacttcattgcaatcacttcatatcgaaaattgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtgagtc 10583023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 9851953 - 9852151
Alignment:
Q  30 gttaagttattagctgttccaaaattgattcggagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaggtg 129  Q
    |||||| |||||||||| ||||||||||||  |||||||||||||||||||||||||  |||| |||| ||| ||||||||| ||||||||| ||| |||    
T  9851953 gttaagctattagctgtgccaaaattgattatgagaagcacttgtcttacacacttgagactcgattcactttcttctctcaatgcatttccatcaagtg 9852052  T
Q  130 gtctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtc 228  Q
    ||||||||||||||||||||||||||||||||      ||| |||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||    
T  9852053 gtctacccacttcattgcaatcacttgatattgaaaattgtgagaatttatccttcctacctcctgaaacatggagcaactacacatcacttgtgagtc 9852151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 43 - 225
Target Start/End: Complemental strand, 10361643 - 10361461
Alignment:
Q  43 ctgttccaaaattgattcggagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaggtggtctacccacttc 142  Q
    |||| ||||||||||||| |||||||||||||||||||| ||||| ||||  |  |||| ||||||||||||||||||||||| ||||||||||||||||    
T  10361643 ctgtgccaaaattgattctgagaagcacttgtcttacactcttgggactcggtaatctttcttctctcactgcatttccctcaagtggtctacccacttc 10361544  T
Q  143 attgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtga 225  Q
    ||||||||||||| |||||      ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10361543 attgcaatcacttcatattgaaaattgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtga 10361461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 48 - 228
Target Start/End: Complemental strand, 11779819 - 11779639
Alignment:
Q  48 ccaaaattgattcggagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaggtggtctacccacttcattgc 147  Q
    ||||||||||||  |||||||| |||||||||| |||||  |||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  11779819 ccaaaattgattttgagaagcatttgtcttacatacttgagactccattctctttcttctctcactgcatttccctcaagtggtctacccacttcattgc 11779720  T
Q  148 aatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtc 228  Q
    |||||||| |||||      ||| |||| |||||||| || ||| |||||||||||||||||||||| |||||||||||||    
T  11779719 aatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagcaattacacttcacttgtgagtc 11779639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 32 - 226
Target Start/End: Original strand, 10091010 - 10091204
Alignment:
Q  32 taagttattagctgttccaaaattgattcggagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaggtggt 131  Q
    |||| |||||||| | |||||| ||||||  |||||||||||||||  ||||||| ||||| |||||||| | ||| || | ||||| |||||| |||||    
T  10091010 taagctattagctatgccaaaaatgattccaagaagcacttgtcttcaacacttgaaactctattctctttcatctatcgccgcattaccctcaagtggt 10091109  T
Q  132 ctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgag 226  Q
    ||||||||||||||||||||| |||| |||   |  |||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10091110 ctacccacttcattgcaatcaattgaaattgaattttgtttgaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgag 10091204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 32 - 226
Target Start/End: Original strand, 10197892 - 10198086
Alignment:
Q  32 taagttattagctgttccaaaattgattcggagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaggtggt 131  Q
    |||| |||||||| | |||||| ||||||  |||||||||||||||  ||||||| ||||| |||||||| | ||| || | ||||| |||||| |||||    
T  10197892 taagctattagctatgccaaaaatgattccaagaagcacttgtcttcaacacttgaaactctattctctttcatctatcgccgcattaccctcaagtggt 10197991  T
Q  132 ctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgag 226  Q
    ||||||||||||||||||||| |||| |||   |  |||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10197992 ctacccacttcattgcaatcaattgaaattgaattttgtttgaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgag 10198086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 48 - 228
Target Start/End: Original strand, 11771466 - 11771646
Alignment:
Q  48 ccaaaattgattcggagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaggtggtctacccacttcattgc 147  Q
    ||||||||||||  ||||||||||||||||||| |||||  |||| |||||||| |||||||||||||||||||| || |||||||||||||||||||||    
T  11771466 ccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttcccccaagtggtctacccacttcattgc 11771565  T
Q  148 aatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtc 228  Q
    ||  |||| |||||      ||| |||| |||||||| || ||| |||||||||||||| ||||||| |||||||||||||    
T  11771566 aaatacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagctattacacttcacttgtgagtc 11771646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 37 - 228
Target Start/End: Original strand, 10502804 - 10502994
Alignment:
Q  37 tattagctgttccaaaattgattcggagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaggtggtctacc 136  Q
    ||||| || |||||||| ||||| | |||||||||||||||  ||||||||||||| ||  | |||| ||||||||||  ||||||  || |||||||||    
T  10502804 tattatctattccaaaaatgatttg-agaagcacttgtcttcaacacttggaactctatgatattccatctctcactgtgtttcccaaagatggtctacc 10502902  T
Q  137 cacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtc 228  Q
    |||||| ||||| ||||||  ||||     |||| ||||||||||||| |||||| ||||||||||||||||||||||||  ||||||||||    
T  10502903 cacttctttgcagtcacttagtattaaaaggtgtgagaatttatcctttcttcctgctgaaacgtggagcaattacacattgcttgtgagtc 10502994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 48 - 228
Target Start/End: Complemental strand, 13853298 - 13853118
Alignment:
Q  48 ccaaaattgattcggagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaggtggtctacccacttcattgc 147  Q
    ||||||||||||  ||||||||||| ||||  ||||||| ||||| ||  | |||| |||||||||| |||||| ||| ||||||| || ||| ||||||    
T  13853298 ccaaaattgattttgagaagcacttttcttcaacacttgaaactctatgatattccatctctcactgtatttccgtcaagtggtctgccaactccattgc 13853199  T
Q  148 aatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtc 228  Q
    |||||||||| ||       ||| |||||||||| ||||||||||||||||| ||||||||||||||||| |||| |||||    
T  13853198 aatcacttgaaatagaaaaatgtgagaatttatcattccttcctcctgaaacatggagcaattacacatcgcttgcgagtc 13853118  T

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Target: chr3; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 69 - 224
Target Start/End: Complemental strand, 10967519 - 10967364
Alignment:
Q  69 acttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaggtggtctacccacttcattgcaatcacttgatatttggtcgt 168  Q
    |||||||||  ||||||| |||||| || | || | ||||||||||||||| | ||   ||| || |||||||||||| | |||||||||||||     |    
T  10967519 acttgtcttcaacacttgcaactcatttatatttcctctctcactgcattttcatctaatggacttcccacttcattgaagtcacttgatatttccgact 10967420  T
Q  169 gtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtg 224  Q
    ||||||||||| | ||| | ||||| |||| |||||||||||||||||||||||||    
T  10967419 gtaagaatttagcattcttgcctccggaaatgtggagcaattacacatcacttgtg 10967364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 220
Target Start/End: Complemental strand, 11244308 - 11244188
Alignment:
Q  100 ttccttctctcactgcatttccctcaggtggtctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaac 199  Q
    |||| |||||||||||||||||  ||  ||||||||||||||| |||||| ||||| ||||| |    ||| | |  ||| | ||||| |||||||||||    
T  11244308 ttccatctctcactgcatttcctacaaatggtctacccacttctttgcaaacacttcatattcgcaattgtgacagcttaacattcctacctcctgaaac 11244209  T
Q  200 gtggagcaattacacatcact 220  Q
    |||||||||||||||||||||    
T  11244208 gtggagcaattacacatcact 11244188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 225
Target Start/End: Original strand, 13397732 - 13397889
Alignment:
Q  68 cacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaggtggtctacccacttcattgcaatcacttgatatttggtcg 167  Q
    ||||||||||  ||||||||| |||| || | || | |||||||||||||||||  ||  |||||| |||||||| ||||| ||||||  |||      |    
T  13397732 cacttgtcttcaacacttggatctcatttatatttcctctctcactgcatttccagcaaatggtcttcccacttcgttgcagtcacttcgtatagatgag 13397831  T
Q  168 tgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtga 225  Q
    ||| |||||||| | ||| | | ||||||||| |||||||||||||||||||||||||    
T  13397832 tgtcagaatttagcattcttgcgtcctgaaacatggagcaattacacatcacttgtga 13397889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 11230137 - 11230092
Alignment:
Q  172 agaatttatccttccttcctcctgaaacgtggagcaattacacatc 217  Q
    |||||||||| || ||||||| ||| ||||||||||||||||||||    
T  11230137 agaatttatcgtttcttcctcttgatacgtggagcaattacacatc 11230092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 32 - 228
Target Start/End: Complemental strand, 55455 - 55259
Alignment:
Q  32 taagttattagctgttccaaaattgattcggagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaggtggt 131  Q
    |||| |||||||||| ||||||||||||| || |||||||||||||||||||||| ||||| |||| ||| ||||||||||||||||||||||| ||||     
T  55455 taagctattagctgtgccaaaattgattctgaaaagcacttgtcttacacacttgaaactccattcactttcttctctcactgcatttccctcaagtgga 55356  T
Q  132 ctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtc 228  Q
    |||||||||||||||||||||||| |||||      ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  55355 ctacccacttcattgcaatcacttcatattgaaaaatgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtcagtc 55259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 225
Target Start/End: Original strand, 26909120 - 26909297
Alignment:
Q  48 ccaaaattgattcggagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaggtggtctacccacttcattgc 147  Q
    ||||||||||||| ||||||||| ||||||  ||||||| ||||| |||||||| | ||| || | ||||| |||||| |||||||||||||||||||||    
T  26909120 ccaaaattgattctgagaagcacatgtcttcaacacttgaaactctattctctttcatctatcgccgcattaccctcaagtggtctacccacttcattgc 26909219  T
Q  148 aatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtga 225  Q
    ||||| |||| |||   |  |||  ||||||||||||||| |||| |||||| |||||||||||||||||||||||||    
T  26909220 aatcaattgaaattgaattttgtttgaatttatccttcctacctcttgaaacctggagcaattacacatcacttgtga 26909297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 228
Target Start/End: Complemental strand, 17850745 - 17850583
Alignment:
Q  66 agcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaggtggtctacccacttcattgcaatcacttgatatttggt 165  Q
    ||||||||||||  |||||||  |||||||  | |||| |||||||||||||||||  | | || || || |||||||||||| |||||| ||||| |      
T  17850745 agcacttgtcttcaacacttgacactcaatgatattccgtctctcactgcatttccgacggatgttcaactcacttcattgcagtcacttcatattagta 17850646  T
Q  166 cgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtc 228  Q
     ||||||||||||||||||| | |||||||||||||||| ||||||||||||||||| |||||    
T  17850645 tgtgtaagaatttatccttcatgcctcctgaaacgtggaacaattacacatcacttgcgagtc 17850583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 213
Target Start/End: Original strand, 11487313 - 11487426
Alignment:
Q  100 ttccttctctcactgcatttccctcaggtggtctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaac 199  Q
    |||| |||||||||||||||||  | |  |||||||| ||||||||||||||||||  | ||      ||| |||||||||| |||||||||||||||||    
T  11487313 ttccgtctctcactgcatttcctacggagggtctacctacttcattgcaatcactttgtgttcatagttgtgagaatttatcattccttcctcctgaaac 11487412  T
Q  200 gtggagcaattaca 213  Q
    ||||||||||||||    
T  11487413 gtggagcaattaca 11487426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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