View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5175-Insertion-3 (Length: 891)
Name: NF5175-Insertion-3
Description: NF5175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5175-Insertion-3 |
 | |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 761; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 761; E-Value: 0
Query Start/End: Original strand, 8 - 891
Target Start/End: Original strand, 27722491 - 27723366
Alignment:
| Q |
8 |
ccaaagactccaaatcaaacaacaaaacagtgcaatcttcatcaaaggtatcacacataacacagttttttgaccatgtagnnnnnnn--gaattgccat |
105 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
27722491 |
ccaaagactccaaatcaaacaacaaaacagtgcaatcttcatcaaaggtatcacacataacacagttttatgaccatgtagaaaaaaaaagaattgccat |
27722590 |
T |
|
| Q |
106 |
agagctactattgctaattaaaacagaaactaaatttggataaaagttttgccgactccaaatgatattgctatctgaacaatatgacaaaatgagcatg |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27722591 |
agagctactattgctaattaaaacagaaactaaatttggataaaagttttgctgactccaaatgatattgctatctgaacaatatgacaaaatgagcatg |
27722690 |
T |
|
| Q |
206 |
caatcttcatcaaaggtatcacacataacagagttacatggactgtttactgcaagatcacgcaaccgagatctggtaggcaaacatttacgacatatgc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27722691 |
caatcttcatcaaaggtatcacacataacagagttacatggactgtttactgcaagatcacgcaaccgagatctggtaggcaaacatttacgacatatgc |
27722790 |
T |
|
| Q |
306 |
atcaaatcagatttttgactttaggcggtgcccctaactttcaaatgagattccatcgaccatgaattctaaggtgagttggatcaattaattcatcaat |
405 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27722791 |
atcaaatcagatttttgactttaggcagtgcccctaactttcaaatgagattccatcgaccatgaattctaaggtgagttggatcaattaattcatcaat |
27722890 |
T |
|
| Q |
406 |
acagtgtcgataagcacttctaacttcatcaatacgcttatcaagacagtgtcgatattcacttttaactgaaaacagcaattcctttatttttattttt |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27722891 |
acagtgtcgataagcacttctaacttcatcaatacgcttatcaagacagtgtcaatattcacttttaactgaaaacagcaattcctttatttttattttt |
27722990 |
T |
|
| Q |
506 |
ctaataccattggtgtatgtatatagttacataggtttctagttttatggaatggaggtgaaagttgttggtttgttatttctggtggtatcatcgtgaa |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||| |
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|
| T |
27722991 |
ctaataccattggtgtatgtatatagttacataggtttctagttttatggaatggaggtgaaagttgttgatattttatttctggtggtatcatcgtgaa |
27723090 |
T |
|
| Q |
606 |
atattcaaagaatctaattcaagtatataatatagcagcagttttgcaaagcacttgtaagtagcaacctatagatgttatcttaaggttgtgcaacgtt |
705 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27723091 |
atattcaaagaatctaattcaagtatataatatagcagcagttttgcaaagcacttgtaagtagcaacctatagatgttatcttaaggttgtgcaacgtt |
27723190 |
T |
|
| Q |
706 |
taatccgatggagatttatgatataatcgccgccctctatttatccactaaacatgtcaattttatccataacacacatgactccttcctatccttcaaa |
805 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27723191 |
taatccgatggagatttctgataaaatcgccgccct-----------ctaaacatgtcaattttatccataacacacatgactccttcctatccttcaaa |
27723279 |
T |
|
| Q |
806 |
tgatgcaattacatcattgagttc-gattcctactatctaaaaacaagatgcacactgtacatctgtgatcacatgtatatcgtgag |
891 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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|
| T |
27723280 |
tgatgcaattacatcattgagttcaaattcctactatctaaaaacaaaatgcacactgtacatctgtgatcacatgtatatcatgag |
27723366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 99 - 626
Target Start/End: Original strand, 27734533 - 27735077
Alignment:
| Q |
99 |
ttgccatagagctactattgctaattaaaacagaaactaaatttggataaaagttttgccgactccaaatgatattgctatctgaacaatatgacaaaat |
198 |
Q |
| |
|
|||||| || |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||| |||| ||||||||| |
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|
| T |
27734533 |
ttgccacagcgctactattggcaattaaaacagaaactaaatttggataaaagttttaccgactccaaatgacattgctacctgaccaatgtgacaaaat |
27734632 |
T |
|
| Q |
199 |
gagcatgcaatcttcatcaaaggtatcacacataacagagttac--atggactgtttactgcaagatcacgcaaccgagatctggtaggcaaacatttac |
296 |
Q |
| |
|
||| |||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||| |||||| |||||| |||||||| ||||||| |
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|
| T |
27734633 |
gagtatgcaatcttcatcaaaggtattacacataacagagttacatatggacagtttactgcaagatcatgcaacctagatctcgtaggcaaccatttac |
27734732 |
T |
|
| Q |
297 |
gacatatgcatcaaatcagatttt-----tgac---------tttaggcggtgcccctaactttcaaatgagattccatcgaccatgaattctaaggtga |
382 |
Q |
| |
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||||||| ||||||||||||||| |||| || ||| ||| ||||||||||||||||||||||||||||||||| | | || | ||| |
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| T |
27734733 |
gacatatctatcaaatcagattttggcagtgaccataacagagtttggccgtgaccctaactttcaaatgagattccatcgaccatggactttaggatga |
27734832 |
T |
|
| Q |
383 |
gttggatcaattaattcatcaatacagtg---tcgataagca-cttctaacttcatc-aatacgcttatcaagacagtgtcgatattcacttttaactga |
477 |
Q |
| |
|
|||||||||||||||| |||||||||||| || | | | |||| ||| | |||||| |||||| ||||||||||||||| |||| ||||||| |
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|
| T |
27734833 |
gttggatcaattaatttatcaatacagtgtattctaactgtatattctccagtcaccaaatacgtttatcaggacagtgtcgatatttacttctaactga |
27734932 |
T |
|
| Q |
478 |
aaacagcaattcctttatttttatttttctaataccattggtgtatgtatatagttacataggtttctagttttatggaatggaggtgaaagttgttggt |
577 |
Q |
| |
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||||| ||||| | ||||| || || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||| |
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|
| T |
27734933 |
aaacaacaatttcattatt----ttcttttaataccattggtgtatgtatatagttacataggtttttagttttatggaatggagatgaaagttgtaggt |
27735028 |
T |
|
| Q |
578 |
ttgttatttctggtggtatcatcgtgaaatattcaaagaatctaattca |
626 |
Q |
| |
|
||||| ||||| |||||||||| |||||||||||| |||||| |||||| |
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|
| T |
27735029 |
ttgttttttcttgtggtatcatagtgaaatattcatagaatccaattca |
27735077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 6e-89; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 178 - 428
Target Start/End: Original strand, 14680391 - 14680641
Alignment:
| Q |
178 |
atctgaacaatatgacaaaatgagcatgcaatcttcatcaaaggtatcacacataacagagttacatggactgtttactgcaagatcacgcaaccgagat |
277 |
Q |
| |
|
||||||||||| |||||||| ||| |||||||||||||||||||||||| |||||||| | |||||||||||||||| |||||||||||||||||||||| |
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|
| T |
14680391 |
atctgaacaatgtgacaaaaggagtatgcaatcttcatcaaaggtatcaaacataacacatttacatggactgtttattgcaagatcacgcaaccgagat |
14680490 |
T |
|
| Q |
278 |
ctggtaggcaaacatttacgacatatgcatcaaatcagatttttgactttaggcggtgcccctaactttcaaatgagattccatcgaccatgaattctaa |
377 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| | || |
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| T |
14680491 |
ctggtaggcaaacatttacgacatatctgccaaatcagatttttgactttagctggtgcccataactttcaaatgagattccatcgaccatgaactatat |
14680590 |
T |
|
| Q |
378 |
ggtgagttggatcaattaattcatcaatacagtgtcgataagcacttctaa |
428 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| | ||||| ||||| |
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|
| T |
14680591 |
gatgagttggatcaattaattcatcaatacagtgtcggtgagcacgtctaa |
14680641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 573 - 709
Target Start/End: Original strand, 9486796 - 9486920
Alignment:
| Q |
573 |
ttggtttgttatttctggtggtatcatcgtgaaatattcaaagaatctaattcaagtatataatatagcagcagttttgcaaagcacttgtaagtagcaa |
672 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
9486796 |
ttggtttgttatttctggtggtatcatagtgaaatattcatagaatccaattcaag------------cagcagttttgcaaagcacttgtaagtagcaa |
9486883 |
T |
|
| Q |
673 |
cctatagatgttatcttaaggttgtgcaacgtttaat |
709 |
Q |
| |
|
|||||| ||||||||||||||| || |||| |||||| |
|
|
| T |
9486884 |
cctatatatgttatcttaaggtcgtacaacttttaat |
9486920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 555 - 645
Target Start/End: Original strand, 26092388 - 26092478
Alignment:
| Q |
555 |
gaatggaggtgaaagttgttggtttgttatttctggtggtatcatcgtgaaatattcaaagaatctaattcaagtatataatatagcagca |
645 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||| ||||||||||| |
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|
| T |
26092388 |
gaatggagatgcaagttgttggtttgttatttctggtggtatcatagtgaaatattcatagaatccaattcaagtatatcatatagcagca |
26092478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 472 - 578
Target Start/End: Original strand, 14680684 - 14680793
Alignment:
| Q |
472 |
aactgaaaacagcaattcctttatttttatttttctaataccattggtgta---tgtatatagttacataggtttctagttttatggaatggaggtgaaa |
568 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||| |||||||||||| |||||||| ||||||| || || |
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|
| T |
14680684 |
aactgaaaacagcaattcctttatttttatttttttaataccatcggtgtatgttgtatatatttacataggtttttagttttacagaatggaaatgcaa |
14680783 |
T |
|
| Q |
569 |
gttgttggtt |
578 |
Q |
| |
|
|||||||||| |
|
|
| T |
14680784 |
gttgttggtt |
14680793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 14680262 - 14680373
Alignment:
| Q |
19 |
aaatcaaacaacaaaacagtgcaatcttcatcaaaggtatcacacataacacagttttttgaccatgtagnnnnnnngaattgccatagagctactattg |
118 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| || ||||| | || |||||| || |||||||||| |
|
|
| T |
14680262 |
aaatcaaacaacaaaacagtccaattttcatcaaaggtatcacacataacacagttttccgagcatgtcgaaaaaaagatttgccacagcgctactattg |
14680361 |
T |
|
| Q |
119 |
ctaattaaaaca |
130 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14680362 |
ctaattaaaaca |
14680373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 14667613 - 14667565
Alignment:
| Q |
10 |
aaagactccaaatcaaacaacaaaacagtgcaatcttcatcaaaggtat |
58 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
14667613 |
aaaggctccaaatcaaacaacaaaacagtgaaatcttcgtcaaaggtat |
14667565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 451 - 493
Target Start/End: Original strand, 26092330 - 26092371
Alignment:
| Q |
451 |
acagtgtcgatattcacttttaactgaaaacagcaattccttt |
493 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
26092330 |
acagtgtcgatattcacttctaactgaaaa-agcaattccttt |
26092371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 14680417 - 14680450
Alignment:
| Q |
38 |
tgcaatcttcatcaaaggtatcacacataacaca |
71 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
14680417 |
tgcaatcttcatcaaaggtatcaaacataacaca |
14680450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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