View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5175-Insertion-4 (Length: 865)
Name: NF5175-Insertion-4
Description: NF5175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5175-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 8 - 427
Target Start/End: Original strand, 29672396 - 29672815
Alignment:
| Q |
8 |
acgagcatagtaaagtgctaaacgtgctatgcctgaatgaccatgaagttcacctatggcttttggaaaaacgggccgacccagggctttttcttgggcc |
107 |
Q |
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| T |
29672396 |
acgagcatagtaaagtgctaaacgtgctatgcctgaatgaccatgaagttcacctatggcttttggaaaaacgggccggcccagggctttttcttgggcc |
29672495 |
T |
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| Q |
108 |
aaacggtgggtttcggtgaagcggcaagagtaactgacggagccgtttgtgaatttaacggcgtggaccataccgtctccgtcgaagaagtggtgaccgg |
207 |
Q |
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| T |
29672496 |
aaacggtgggtttcggtgaagcggcaagagtaacttacggagccgtttgtgaatttaacggcgtggaccataccgtctccgtcgaagaagtggtgaccgg |
29672595 |
T |
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| Q |
208 |
ctactggctcgtaaagtggattggcgccgttacggaggtaaacaccgtcaatgttggttgggattttgccggtaattggaagagattgggttaccgggtg |
307 |
Q |
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| T |
29672596 |
ctactggctcgtaaagtggattggcgccgttacggaggtaaacaccgtcaatgttggttgggattttgccggtaattggaagagattgggttaccgggtg |
29672695 |
T |
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| Q |
308 |
ttccggtactggggcgaagttaccggcaatttggacacgtgggtcggaggtttttggtagtgggtgtttctgttcttgtttgattaaggttgtttcgacg |
407 |
Q |
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| T |
29672696 |
ttccggtactggggcgaagttaccggcaatttgaacacgtgggtcggaggttttgggtagtgggtgtttttgttcttgtttgattaaggttgtttcgacg |
29672795 |
T |
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| Q |
408 |
aagtcaagggcggtggcggc |
427 |
Q |
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| T |
29672796 |
aagtcgagggcggtggcggc |
29672815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 563 - 857
Target Start/End: Original strand, 29672951 - 29673244
Alignment:
| Q |
563 |
aggaaaaggtagtgttgtttgaagtgagcatgagattttgttgttttgggagatagatcttttcttctttaaagtgattgaatttgatcttgaatctttt |
662 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29672951 |
aggaaaaggtagtgttgtttgaagtgagcatgagattttgttgttttgggagatagatcttttcttctttaaagtgattgaatttgatcttgaatc-ttt |
29673049 |
T |
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| Q |
663 |
gaaaggagaagagtatgaagatgatgaaccaagtttggtgttaatccatgtgtttgatgaagccgttgatgttgccatagtgattataatagttagttat |
762 |
Q |
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| T |
29673050 |
gaaaggagaagagtatgaagatgatgaaccaagtttggtgttaatccatgtgtttgatgaagccgttgatgttgccatagtgatgataa----tagttat |
29673145 |
T |
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| Q |
763 |
ctattttgattcttttggag-aaaaattggtttaggttggtt-gagtc-ttttttgttttgttgcaaggttgttcgtatttagagcg-atgagaatgta |
857 |
Q |
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| T |
29673146 |
ctattttgattcttttgtagtaaaaattgttttggtttggttggtgtctttttttgttttgttgaaaggttgtttgtgtttagagagaatgagaatgta |
29673244 |
T |
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