View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5175-Insertion-6 (Length: 626)
Name: NF5175-Insertion-6
Description: NF5175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5175-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 8 - 619
Target Start/End: Complemental strand, 6969321 - 6968710
Alignment:
| Q |
8 |
aataaccctttattaaatggttaaacatgaatttatttggttgaggaatttgatcaaacagtttgtgtgcgtaacgaagatctcgaagatggacactgga |
107 |
Q |
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| T |
6969321 |
aataaccctttattaaatggttaaacatgaatttatttggttgaggaatttgatcaaacagtttgtgtgcgtaacgaagatctcgaagttggacactgga |
6969222 |
T |
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| Q |
108 |
ggagactaatttgcctaatgtgagaacttgggtggcaagtccatggaggatgatttgtgcatgaacatgtttgagttgttttagggagatgcattggtct |
207 |
Q |
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| T |
6969221 |
ggagactaatttgcctaatgtgagaacttgggtggcaagtccatggaggatgatttgtgcatgaacatgtttgagttgttttagggagatgcattggtct |
6969122 |
T |
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| Q |
208 |
atgagatagtgaagggtttgatgagttggggactttaactcttgcaaaatggttttactgatttgtgtttgtgtgtgtatgcaaaacgaaacagcttttg |
307 |
Q |
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| T |
6969121 |
atgagatagtgaagggtttgatgagttggggactttaactcttgcaaaatggttttactgatttgtgtttctgtgtgtatgcaaaacgaaacagcttttg |
6969022 |
T |
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| Q |
308 |
ctggtttcagtttgaaaatggaggacattaaaaaatacctcagtttttgtgctggtttcaagtttatattgttaaaaaacaactaaatattggtgatact |
407 |
Q |
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| T |
6969021 |
ctggtttcagtttgaaaatggaggacattaaaaaatacctcagtttttgtgctggtttcaagtttatattgttaaaaaacaactaaatattggtgatact |
6968922 |
T |
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| Q |
408 |
ggaacatgacgatgatgaaaagtgcaggcaaaattagtttaccttacgaagaactttagtcctgtgtgaatatgtaatgtcaatggtatttgaatataa- |
506 |
Q |
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| T |
6968921 |
ggaacatgacgatgatgaaaagtgcaggcaaaattagtttaccttacgaagaactttagtcctgtgtgaatatgtaatgtcaatggtatttgaatataaa |
6968822 |
T |
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| Q |
507 |
-acttacatatatttagaatagcaatgctgaatagcacgagacgaaagagaaagagaaatgatatttgtaactagtttttcacaactcttatctctcata |
605 |
Q |
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| T |
6968821 |
cacttacatatatttagaatagcaatgctgaatagtacgagacgaaagagaaagagaaatgatatttgtaaccagtttttgacaactc--gtctctcata |
6968724 |
T |
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| Q |
606 |
atcacatgtgattt |
619 |
Q |
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| T |
6968723 |
ctcatatgtgattt |
6968710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 20817804 - 20817836
Alignment:
| Q |
45 |
tggttgaggaatttgatcaaacagtttgtgtgc |
77 |
Q |
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| T |
20817804 |
tggttgaggaatttgatcaaacagtttgtgtgc |
20817836 |
T |
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