View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5175-Insertion-7 (Length: 401)
Name: NF5175-Insertion-7
Description: NF5175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5175-Insertion-7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 401
Target Start/End: Complemental strand, 45264960 - 45264567
Alignment:
| Q |
8 |
caacatgttgaaaagaaatgaagaaaaaa-gggacagagtaatcaataagaatgggaatcccttccaccattcaaatagctaaaaatggctgattgtgga |
106 |
Q |
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| T |
45264960 |
caacatgttgaaaagaaatgaagaaaaaaagggacagagtaatcaataagaatgggaatct-ttccaccattcaaatagctaaaaatggctgattgtgga |
45264862 |
T |
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| Q |
107 |
attgccaagttcttcttactcctttcaaataatgttactagtttagtttatggcaagcttaatgcaatnnnnnnntaaaacaatattatcaattaaagaa |
206 |
Q |
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| T |
45264861 |
attgccaagttcttcttactcctttcaaataatgttactagtttagtttatggcaagcttaatgcaataaaaaaataaaacaatattatcaattaaagaa |
45264762 |
T |
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| Q |
207 |
gagtaatatatatcattttgtgacaccattgtattgtatcttactgagcgaacgatagttaactaccgttgaagataaaatgatcaatttcggatgtctg |
306 |
Q |
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| T |
45264761 |
gagtaatatatatcattttgtgacaccattgtattgtatcttactaagcgaacgatagttaactaccgttgaagataaaatgatcaatttcgggtgtctg |
45264662 |
T |
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| Q |
307 |
aaagctattttggaagtttaaagaacaatatactttccacaaatgtagctgacatattcctacaactacgtaggaatatgacacattcatctcca |
401 |
Q |
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| T |
45264661 |
aaagctattttgaaagcttaaagaacaatatgctttgcacaaatgcagctgacatattcctacaactacgtaggaatatgacacattcatctcca |
45264567 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 46896252 - 46896211
Alignment:
| Q |
255 |
cgaacgatagttaactaccgttgaagataaaatgatcaattt |
296 |
Q |
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| T |
46896252 |
cgaacgatagttaactatcgttggagatagaatgatcaattt |
46896211 |
T |
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