View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5175-Insertion-8 (Length: 260)
Name: NF5175-Insertion-8
Description: NF5175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5175-Insertion-8 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 8 - 255
Target Start/End: Complemental strand, 31414862 - 31414615
Alignment:
| Q |
8 |
cccccatggcctacgcctcactcccttgtaccgcttccatacaggaggcgttcttacttcacgcgcctctacagttgtgtctaaatcattgtcactttta |
107 |
Q |
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| T |
31414862 |
cccccatggcctacgcctcactcccttgtaccgcttccatacaggaggcatgcttacttcacgcgcctctacagttgtgtctaaatcattgtcactttta |
31414763 |
T |
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| Q |
108 |
gggcttggaaaaggttgatgagatttcagcatgctagaatcatcaaaaagaaggtattgttgaatgtgttccaaatattccaaatctgagtctttggtgg |
207 |
Q |
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| T |
31414762 |
gggcttggaaaaggttgatgagatttcagcatgctagaatcatcaaaaagaaggtattgttgaatgtgttccaaatattccaaatctgagtctttggtgg |
31414663 |
T |
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| Q |
208 |
ttgaagccatgttttggaggaaagagtagtggtattttggatctaaag |
255 |
Q |
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| T |
31414662 |
ttgaagccatgttttggaggaaagagtagtggtattttggatctaaag |
31414615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 31410901 - 31410688
Alignment:
| Q |
8 |
cccccatggcctacgcctcactcccttgtaccgcttccatacaggaggcgttcttacttcacgcgcctctacagttgtgtctaaatcattgtcactttta |
107 |
Q |
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| T |
31410901 |
cccccatggcctacgcctcacgcccttgtaccgcttccatatgggaggggtgtttacttcacgcgcctctacaattgtgtctgactcattgtcactttta |
31410802 |
T |
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| Q |
108 |
gggcttggaaaaggttgatgagatttcagcatgctagaatcatcaaaaagaaggtattgttgaatgtgttccaaatattccaaatctgagtctttggtgg |
207 |
Q |
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| T |
31410801 |
gggcttggagaaggttgataagatgttagaaagctggaatcatcaaaaagaaggtattgttgaatatgttccaaataggcaaaatctgagtcattggtgg |
31410702 |
T |
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| Q |
208 |
ttgaagccatgttt |
221 |
Q |
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| T |
31410701 |
tagaagccatgttt |
31410688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 31407594 - 31407530
Alignment:
| Q |
144 |
gaatcatcaaaaagaaggtattgttgaatgtgttccaaatattccaaatctgagtctttggtggt |
208 |
Q |
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| T |
31407594 |
gaatcatcatgaagaaggtattgttgaatatcttccaaatatgcaaactctgagtcttttgtggt |
31407530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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