View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5175-Insertion-9 (Length: 179)
Name: NF5175-Insertion-9
Description: NF5175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5175-Insertion-9 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 28673516 - 28673653
Alignment:
| Q |
8 |
aaaacgacatcaatatcaatatgatatacttgcgatatgttcattcgattgagctcatccaaacaacattgaagatggcgccaacaacagttgaggattt |
107 |
Q |
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| T |
28673516 |
aaaacgacatcaatatcaatatgatatacttgcgatatgttcattcgattgagctcatccaaacaacattgaagatggcgccaacaacagttgaggattt |
28673615 |
T |
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| Q |
108 |
gaagctaaagttattcacagacgagctttctcaacttg |
145 |
Q |
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| T |
28673616 |
gaagctaaagttattcacagacgagctttctcaacttg |
28673653 |
T |
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Target: chr2 (Bit Score: 50; Significance: 7e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 37564010 - 37564099
Alignment:
| Q |
56 |
ttgagctcatccaaacaacattgaagatggcgccaacaacagttgaggatttgaagctaaagttattcacagacgagctttctcaacttg |
145 |
Q |
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| T |
37564010 |
ttgagctcatccaaacagtattgaagatggcgccaacatcggatgaggaattgaagctaagattattcacaggcgaggtttctcaacttg |
37564099 |
T |
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