View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5175_high_1 (Length: 895)
Name: NF5175_high_1
Description: NF5175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5175_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 809; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 809; E-Value: 0
Query Start/End: Original strand, 20 - 877
Target Start/End: Complemental strand, 3656359 - 3655502
Alignment:
| Q |
20 |
aggcatagaaagtggcggtacaatgaccatcaaggagaaatggtatatttctaccttaacagatgtggaagaagttaaaatggtaataaggatgttaccc |
119 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3656359 |
aggcatagaaagtggcggtacaataaccatcaaggagaaatggtatatttctaccttaacagatgtggaagaagttaaaatggtaataaggatgttaccc |
3656260 |
T |
|
| Q |
120 |
atatgggccacaaccataatgttttggacaatccatgctcaaatgacaacattctcagtatcacaagcaacaaccatggattgtcaaattggaacatttc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3656259 |
atatgggccacaaccataatgttttggacaatccatgctcaaatgacaacattctcagtatcacaagcaacaaccatggattgtcaaattggaacatttc |
3656160 |
T |
|
| Q |
220 |
aaatcccagcagcatcaatgaccgtcttcttaatcggaactattctcctaaccgttcctttctatgaccgcttcattcgaccagtcgcnnnnnnngtact |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
3656159 |
aaatcccagcagcatcaatgaccgtcttcttaatcggaactattctcctaaccgttcctttctacgaccgcttcattcgacccgtcgcaaaaaaagtact |
3656060 |
T |
|
| Q |
320 |
aaacaactcacacggattcacccctttacaacgcatcggtgttggtttagtcctctcagtaatatccatggttgcggcagcactcatagaaatgaagcga |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3656059 |
aaacaactcacacggattcacccctttacaacgcattggtgttggtttagtcctctcagtaatatccatggttgcggcagcactcatagaaatgaagcga |
3655960 |
T |
|
| Q |
420 |
ttgaaattcgcacgatcacatggttttgtagacgatccaacagcaaagatgccattgagtgtgttttggttggtgccacaatttttctttgttggatctg |
519 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3655959 |
ttgaaattcgcaagatcacatggttttgtagacgatccaacggcaaagatgccattgagtgtgttttggttggtgccacaatttttctttgttgggtctg |
3655860 |
T |
|
| Q |
520 |
gagaggcctttatgtatatgggacaattagacttttttctaagagaatgtcctaaaggaatgaaaactatgagtacagggttgttcttgagcacactctc |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3655859 |
gagaggcctttatgtatatgggacaattagacttttttctaagagaatgtcctaaaggaatgaaaactatgagtacagggttgttcttgagcacactctc |
3655760 |
T |
|
| Q |
620 |
aatagggtttttctttagctcattattagtgactctagtgaacaatgtgaccggtccaaataaaccatggattgcggataatcttgatcaagggaggctc |
719 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3655759 |
aatagggtttttctttagctcattattagtgactctagtgaacaatgtgaccggtccaaataaaccatggattgcggataatcttgatcaagggaggctc |
3655660 |
T |
|
| Q |
720 |
tatgatttttattggctattggctatgctaagtgctataaatgtggtgatatatttggcttgtgctaagtggtatgtgtacaaggacaagagacttgctg |
819 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3655659 |
tatgatttttattggctattggctatgctaagtgctataaatgtggtgatatatttggcttgtgctaagtggtatgtgtacaaggacaagagacttgctg |
3655560 |
T |
|
| Q |
820 |
aggcaggcatagaattggaagaaatagaggcctctacattccatgcataggggttttc |
877 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3655559 |
aggcaggcatagaattggaagaaatagaggcctctacattccatgcataggggttttc |
3655502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 69 - 829
Target Start/End: Complemental strand, 3645639 - 3644876
Alignment:
| Q |
69 |
tctaccttaacagatgtggaagaagttaaaatggtaataaggatgttacccatatgggccacaaccataatgttttggacaatccatgctcaaatgacaa |
168 |
Q |
| |
|
||||||||||| ||| | |||||||| ||| |||| |||| ||| | || |||||||| ||||||| |||||||||| | || | |||||||| | |
|
|
| T |
3645639 |
tctaccttaaccgatatagaagaagtgaaattggtgctaagaatgctccctatatgggcatcaaccatcgtgttttggactgttcaagttcaaatgatga |
3645540 |
T |
|
| Q |
169 |
cattctcagtatcacaagcaacaaccatggattgtcaaattggaa---catttcaaatcccagcagcatcaatgaccgtcttcttaatcggaactattct |
265 |
Q |
| |
|
|| |||| |||||||| ||||| || |||||| | || ||||||| |||||||||||||||||||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
3645539 |
cactctcggtatcacaggcaaccactatggatcgccacattggaaaatcatttcaaatcccagcagcatcaatgacatcctttttaattggaactattct |
3645440 |
T |
|
| Q |
266 |
cctaaccgttcctttctatgaccgcttcattcgaccagtcgcnnnnnnngtactaaacaactcacacggattcacccctttacaacgcatcggtgttggt |
365 |
Q |
| |
|
| | | || ||||| |||||||| ||||| | ||| | || ||||| || ||| |||| || | ||||||||||| | | || |||||| |
|
|
| T |
3645439 |
cttgaatgtccctttttatgaccgtgtcatttgtccaattgcaaggaaagtacttaaaaacccacaagggcttacccctttacagcatactggagttggt |
3645340 |
T |
|
| Q |
366 |
ttagtcctctcagtaatatccatggttgcggcagcactcatagaaatgaagcgattgaaattcgcacgatcacatggttttgtagacgatccaacagcaa |
465 |
Q |
| |
|
||||| || ||| | |||| |||||||| ||||| || | ||| |||||||| | ||| |||| |||||||||||| || | |||||||| |||| |
|
|
| T |
3645339 |
ttagttctttcaatcttatctatggttgcagcagctcttgtcgaagaaaagcgattaatatttgcacaatcacatggtttggtgaatgatccaacggcaa |
3645240 |
T |
|
| Q |
466 |
agatgccattgagtgtgttttggttggtgccacaatttttctttgttggatctggagaggcctttatgtatatgggacaattagacttttttctaagaga |
565 |
Q |
| |
|
|||| ||||| ||||| || |||||| | || ||||||||| |||| ||||| |||||| | || ||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
3645239 |
agattccattaagtgttttctggttgataccgcaatttttcattgtgggatcgggagagtctttcatgtatatgggacaactagacttttttctcagaga |
3645140 |
T |
|
| Q |
566 |
atgtcctaaaggaatgaaaactatgagtacagggttgttcttgagcacactctcaatagggtttttctttagctcattattagtgactctagtgaacaat |
665 |
Q |
| |
|
|||||| | || |||||||||||||| | || | |||||||| || || |||| |||||||| ||||| ||||||||| || |||||| || |
|
|
| T |
3645139 |
atgtccagatgggatgaaaactatgagcatgggactattcttgagttcaagatccttaggatttttcttcagctctttattagtgtctacagtgaataaa |
3645040 |
T |
|
| Q |
666 |
gtgaccggtccaaataaaccatggattgcggataatcttgatcaagggaggctctatgatttttattggctattggctatgctaagtgctataaatgtgg |
765 |
Q |
| |
|
| || ||||||| ||||||||||||||| ||||||||| | ||||||||||| || ||| ||| ||||| ||||||||| | |||||||||||| || |
|
|
| T |
3645039 |
ataacaggtccaagtaaaccatggattgcagataatcttaaccaagggaggcttaattattattactggcttttggctatgttgagtgctataaatttga |
3644940 |
T |
|
| Q |
766 |
tgatatatttggcttgtgctaagtggtatgtgtacaaggacaagagacttgctgaggcaggcat |
829 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||| |||| ||||||||| |||||| |
|
|
| T |
3644939 |
tgatatacttggcttgtgcaaagtggtatgtgtacaaggataagaaggttgctgaggaaggcat |
3644876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 755 - 802
Target Start/End: Complemental strand, 9572095 - 9572048
Alignment:
| Q |
755 |
tataaatgtggtgatatatttggcttgtgctaagtggtatgtgtacaa |
802 |
Q |
| |
|
||||||| || |||||||||||||||| || ||||||||||||||||| |
|
|
| T |
9572095 |
tataaatttgctgatatatttggcttgagcaaagtggtatgtgtacaa |
9572048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 56 - 193
Target Start/End: Original strand, 41875363 - 41875500
Alignment:
| Q |
56 |
gaaatggtatatttctaccttaacagatgtggaagaagttaaaatggtaataaggatgttacccatatgggccacaaccataatgttttggacaatccat |
155 |
Q |
| |
|
|||||||||| | || |||||||||||||| |||||||| ||| |||| |||| |||||||| |||||||||||||| ||||||||||||||| | || |
|
|
| T |
41875363 |
gaaatggtatctatcaaccttaacagatgttgaagaagtaaaattggttttaagaatgttaccaatatgggccacaacgataatgttttggacagtatat |
41875462 |
T |
|
| Q |
156 |
gctcaaatgacaacattctcagtatcacaagcaacaac |
193 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
41875463 |
gcacaaatgaccacattctcagtatcacaagcaacaac |
41875500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 466 - 835
Target Start/End: Original strand, 41875776 - 41876145
Alignment:
| Q |
466 |
agatgccattgagtgtgttttggttggtgccacaatttttctttgttggatctggagaggcctttatgtatatgggacaattagacttttttctaagaga |
565 |
Q |
| |
|
|||| ||| ||||||||||||||||| | |||||||| |||||||| || || || || || |||| ||||| |||||||| || ||||| |||| || |
|
|
| T |
41875776 |
agattccaatgagtgtgttttggttgatcccacaattcttctttgtggggtcaggtgaagcatttacttatataggacaattggattttttcttaaggga |
41875875 |
T |
|
| Q |
566 |
atgtcctaaaggaatgaaaactatgagtacagggttgttcttgagcacactctcaatagggtttttctttagctcattattagtgactctagtgaacaat |
665 |
Q |
| |
|
|||||||||||| ||||| |||||||| || || ||||| ||||| ||| | || | || |||||||||||||| ||||| || ||| | || |||| |
|
|
| T |
41875876 |
atgtcctaaagggatgaagactatgagcacgggtttgtttttgagtacattgtctttgggatttttctttagctctttattggttactttggtccacaag |
41875975 |
T |
|
| Q |
666 |
gtgaccggtccaaataaaccatggattgcggataatcttgatcaagggaggctctatgatttttattggctattggctatgctaagtgctataaatgtgg |
765 |
Q |
| |
|
||||| ||| |||| || ||| |||| ||||||||| || | | | ||| ||| | ||||||||||| |||||| || | |||| | ||||| ||| |
|
|
| T |
41875976 |
gtgacaagtcagcataagccctggcttgctgataatcttaatgaggcaaagctttataacttttattggcttttggctttgttgagtgttttaaatttgg |
41876075 |
T |
|
| Q |
766 |
tgatatatttggcttgtgctaagtggtatgtgtacaaggacaagagacttgctgaggcaggcatagaatt |
835 |
Q |
| |
|
| ||||| ||| ||||||||| |||||||| || ||||| || || |||||||||| |||||||||||| |
|
|
| T |
41876076 |
tcatatacttgctttgtgctaattggtatgtttataaggataaaaggcttgctgaggaaggcatagaatt |
41876145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University